Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 SEC1P-202ENST00000473944 940 ntBASIC20.43■□□□□ 0.86
CHD9Q3L8U1 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 ZFAND2B-207ENST00000409412 569 ntTSL 2 BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
CHD9Q3L8U1 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 HMGN1P19-201ENST00000436976 333 ntBASIC20.42■□□□□ 0.86
CHD9Q3L8U1 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 DRAXINP1-201ENST00000437611 948 ntBASIC20.42■□□□□ 0.86
CHD9Q3L8U1 AC117500.6-201ENST00000624871 588 ntBASIC20.42■□□□□ 0.86
CHD9Q3L8U1 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
CHD9Q3L8U1 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 BRSK2-212ENST00000531197 3163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 GPAT2P1-201ENST00000444924 1672 ntBASIC20.41■□□□□ 0.86
CHD9Q3L8U1 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 AL391422.3-201ENST00000603791 2761 ntBASIC20.41■□□□□ 0.86
CHD9Q3L8U1 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 TSPY22P-201ENST00000427496 604 ntBASIC20.41■□□□□ 0.86
CHD9Q3L8U1 BET1L-206ENST00000486280 665 ntTSL 3 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 AC116021.1-201ENST00000530049 653 ntTSL 3 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
CHD9Q3L8U1 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 L3HYPDH-201ENST00000247194 1527 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 AP000867.3-201ENST00000524675 377 ntBASIC20.4■□□□□ 0.86
CHD9Q3L8U1 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 AF228730.7-201ENST00000641842 219 ntBASIC20.4■□□□□ 0.86
CHD9Q3L8U1 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 GTF2IRD2B-208ENST00000619142 1932 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 NFIB-201ENST00000380921 1274 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC20.4■□□□□ 0.86
CHD9Q3L8U1 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC20.39■□□□□ 0.86
CHD9Q3L8U1 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC20.39■□□□□ 0.86
CHD9Q3L8U1 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
CHD9Q3L8U1 AL691432.2-201ENST00000607222 2038 ntBASIC20.39■□□□□ 0.85
CHD9Q3L8U1 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.39■□□□□ 0.85
CHD9Q3L8U1 AL121912.1-201ENST00000603683 238 ntBASIC20.39■□□□□ 0.85
CHD9Q3L8U1 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC20.39■□□□□ 0.85
CHD9Q3L8U1 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CHD9Q3L8U1 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CHD9Q3L8U1 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CHD9Q3L8U1 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms