Protein–RNA interactions for Protein: P67936

TPM4, Tropomyosin alpha-4 chain, humanhuman

Predictions only

Length 248 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM4P67936 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM4P67936 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
TPM4P67936 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM4P67936 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC21.53■■□□□ 1.04
TPM4P67936 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM4P67936 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
TPM4P67936 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
TPM4P67936 CYP2T1P-201ENST00000432607 1285 ntBASIC21.53■■□□□ 1.04
TPM4P67936 CNN2P6-201ENST00000439038 900 ntBASIC21.53■■□□□ 1.04
TPM4P67936 AC034268.1-201ENST00000441047 882 ntBASIC21.53■■□□□ 1.04
TPM4P67936 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC21.53■■□□□ 1.04
TPM4P67936 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.53■■□□□ 1.04
TPM4P67936 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC21.53■■□□□ 1.04
TPM4P67936 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.53■■□□□ 1.04
TPM4P67936 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC21.53■■□□□ 1.04
TPM4P67936 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
TPM4P67936 Z98044.1-201ENST00000632503 1764 ntBASIC21.53■■□□□ 1.04
TPM4P67936 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC21.53■■□□□ 1.04
TPM4P67936 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM4P67936 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.53■■□□□ 1.04
TPM4P67936 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM4P67936 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.53■■□□□ 1.04
TPM4P67936 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
TPM4P67936 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.53■■□□□ 1.04
TPM4P67936 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
TPM4P67936 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
TPM4P67936 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC21.52■■□□□ 1.04
TPM4P67936 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC21.52■■□□□ 1.04
TPM4P67936 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
TPM4P67936 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
TPM4P67936 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC21.52■■□□□ 1.04
TPM4P67936 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.52■■□□□ 1.04
TPM4P67936 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
TPM4P67936 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.52■■□□□ 1.04
TPM4P67936 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.52■■□□□ 1.04
TPM4P67936 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.52■■□□□ 1.04
TPM4P67936 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.04
TPM4P67936 AC090164.3-201ENST00000610780 2143 ntBASIC21.52■■□□□ 1.03
TPM4P67936 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.03
TPM4P67936 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
TPM4P67936 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC21.52■■□□□ 1.03
TPM4P67936 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC21.52■■□□□ 1.03
TPM4P67936 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TPM4P67936 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TPM4P67936 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TPM4P67936 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
TPM4P67936 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
TPM4P67936 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
TPM4P67936 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
TPM4P67936 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TPM4P67936 NFKBIB-201ENST00000313582 1159 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TPM4P67936 AC016769.1-201ENST00000409132 1010 ntBASIC21.51■■□□□ 1.03
TPM4P67936 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.51■■□□□ 1.03
TPM4P67936 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
TPM4P67936 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC21.51■■□□□ 1.03
TPM4P67936 AC007613.1-201ENST00000572811 2597 ntBASIC21.51■■□□□ 1.03
TPM4P67936 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TPM4P67936 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC21.51■■□□□ 1.03
TPM4P67936 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC21.51■■□□□ 1.03
TPM4P67936 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TPM4P67936 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
TPM4P67936 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC21.51■■□□□ 1.03
TPM4P67936 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TPM4P67936 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
TPM4P67936 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
TPM4P67936 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC21.5■■□□□ 1.03
TPM4P67936 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
TPM4P67936 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.5■■□□□ 1.03
TPM4P67936 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC21.5■■□□□ 1.03
TPM4P67936 AC104581.1-202ENST00000635932 2618 ntBASIC21.5■■□□□ 1.03
TPM4P67936 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 AC093525.10-201ENST00000625130 1569 ntBASIC21.5■■□□□ 1.03
TPM4P67936 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC21.5■■□□□ 1.03
TPM4P67936 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC21.5■■□□□ 1.03
TPM4P67936 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
TPM4P67936 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.5■■□□□ 1.03
TPM4P67936 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.5■■□□□ 1.03
TPM4P67936 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.5■■□□□ 1.03
TPM4P67936 DUX4L16-201ENST00000555130 1264 ntBASIC21.5■■□□□ 1.03
TPM4P67936 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC21.5■■□□□ 1.03
TPM4P67936 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC21.5■■□□□ 1.03
TPM4P67936 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms