Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN1P58418 AC104417.2-201ENST00000562989 1793 ntBASIC17.18■□□□□ 0.34
CLRN1P58418 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
CLRN1P58418 CAPZB-202ENST00000264203 2068 ntTSL 2 BASIC17.18■□□□□ 0.34
CLRN1P58418 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN1P58418 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN1P58418 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CLRN1P58418 POU5F1P3-201ENST00000428824 1078 ntBASIC17.18■□□□□ 0.34
CLRN1P58418 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC17.18■□□□□ 0.34
CLRN1P58418 LY6E-205ENST00000519611 635 ntTSL 3 BASIC17.18■□□□□ 0.34
CLRN1P58418 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
CLRN1P58418 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC17.18■□□□□ 0.34
CLRN1P58418 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.18■□□□□ 0.34
CLRN1P58418 MIR4651-201ENST00000582622 73 ntBASIC17.18■□□□□ 0.34
CLRN1P58418 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN1P58418 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN1P58418 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC17.18■□□□□ 0.34
CLRN1P58418 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC17.18■□□□□ 0.34
CLRN1P58418 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN1P58418 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
CLRN1P58418 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN1P58418 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN1P58418 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC17.18■□□□□ 0.34
CLRN1P58418 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.18■□□□□ 0.34
CLRN1P58418 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN1P58418 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC17.18■□□□□ 0.34
CLRN1P58418 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN1P58418 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
CLRN1P58418 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN1P58418 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN1P58418 SLC25A3-201ENST00000188376 1909 ntAPPRIS ALT1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN1P58418 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.17■□□□□ 0.34
CLRN1P58418 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
CLRN1P58418 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC17.17■□□□□ 0.34
CLRN1P58418 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN1P58418 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC17.17■□□□□ 0.34
CLRN1P58418 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN1P58418 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN1P58418 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN1P58418 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN1P58418 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN1P58418 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.17■□□□□ 0.34
CLRN1P58418 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC17.17■□□□□ 0.34
CLRN1P58418 AC128676.1-201ENST00000454392 318 ntBASIC17.17■□□□□ 0.34
CLRN1P58418 DENND3-207ENST00000518347 850 ntTSL 2 BASIC17.17■□□□□ 0.34
CLRN1P58418 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
CLRN1P58418 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC17.17■□□□□ 0.34
CLRN1P58418 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC17.17■□□□□ 0.34
CLRN1P58418 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
CLRN1P58418 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC17.17■□□□□ 0.34
CLRN1P58418 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN1P58418 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN1P58418 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN1P58418 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
CLRN1P58418 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC17.16■□□□□ 0.34
CLRN1P58418 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC17.16■□□□□ 0.34
CLRN1P58418 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC17.16■□□□□ 0.34
CLRN1P58418 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC17.16■□□□□ 0.34
CLRN1P58418 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
CLRN1P58418 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
CLRN1P58418 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC17.16■□□□□ 0.34
CLRN1P58418 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.16■□□□□ 0.34
CLRN1P58418 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC17.16■□□□□ 0.34
CLRN1P58418 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC17.16■□□□□ 0.34
CLRN1P58418 FAM201B-201ENST00000458407 597 ntBASIC17.16■□□□□ 0.34
CLRN1P58418 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC17.16■□□□□ 0.34
CLRN1P58418 IRX5-204ENST00000560154 879 ntTSL 5 BASIC17.16■□□□□ 0.34
CLRN1P58418 C1QL1P1-201ENST00000568105 661 ntBASIC17.16■□□□□ 0.34
CLRN1P58418 RN7SL471P-201ENST00000580476 299 ntBASIC17.16■□□□□ 0.34
CLRN1P58418 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC17.16■□□□□ 0.34
CLRN1P58418 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 AC087289.5-201ENST00000586076 3175 ntBASIC17.16■□□□□ 0.34
CLRN1P58418 PCDHA4-201ENST00000378125 2328 ntTSL 5 BASIC17.16■□□□□ 0.34
CLRN1P58418 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC17.16■□□□□ 0.34
CLRN1P58418 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
CLRN1P58418 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN1P58418 AC018445.3-201ENST00000624177 1945 ntBASIC17.15■□□□□ 0.34
CLRN1P58418 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.15■□□□□ 0.34
CLRN1P58418 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN1P58418 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN1P58418 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC17.15■□□□□ 0.34
CLRN1P58418 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN1P58418 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.15■□□□□ 0.34
CLRN1P58418 SDHAP1-207ENST00000440850 2000 ntBASIC17.15■□□□□ 0.34
CLRN1P58418 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN1P58418 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
CLRN1P58418 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 46.6 ms