Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC19.82■□□□□ 0.76
NEK3P51956 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
NEK3P51956 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC19.82■□□□□ 0.76
NEK3P51956 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NEK3P51956 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NEK3P51956 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NEK3P51956 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NEK3P51956 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
NEK3P51956 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NEK3P51956 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
NEK3P51956 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
NEK3P51956 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC19.82■□□□□ 0.76
NEK3P51956 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.82■□□□□ 0.76
NEK3P51956 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC19.81■□□□□ 0.76
NEK3P51956 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
NEK3P51956 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC19.81■□□□□ 0.76
NEK3P51956 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC19.81■□□□□ 0.76
NEK3P51956 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC19.81■□□□□ 0.76
NEK3P51956 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC19.81■□□□□ 0.76
NEK3P51956 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.81■□□□□ 0.76
NEK3P51956 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
NEK3P51956 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC19.81■□□□□ 0.76
NEK3P51956 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC19.81■□□□□ 0.76
NEK3P51956 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC19.81■□□□□ 0.76
NEK3P51956 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC19.81■□□□□ 0.76
NEK3P51956 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
NEK3P51956 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 CAMKV-205ENST00000467248 1688 ntTSL 2 BASIC19.81■□□□□ 0.76
NEK3P51956 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC19.81■□□□□ 0.76
NEK3P51956 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NEK3P51956 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC19.81■□□□□ 0.76
NEK3P51956 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
NEK3P51956 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC19.8■□□□□ 0.76
NEK3P51956 TNFRSF1A-201ENST00000162749 2223 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NEK3P51956 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NEK3P51956 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NEK3P51956 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NEK3P51956 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
NEK3P51956 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
NEK3P51956 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NEK3P51956 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
NEK3P51956 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NEK3P51956 SAPCD2P4-201ENST00000424595 1171 ntBASIC19.8■□□□□ 0.76
NEK3P51956 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC19.8■□□□□ 0.76
NEK3P51956 AP002982.1-201ENST00000492365 877 ntBASIC19.8■□□□□ 0.76
NEK3P51956 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.8■□□□□ 0.76
NEK3P51956 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC19.8■□□□□ 0.76
NEK3P51956 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC19.8■□□□□ 0.76
NEK3P51956 SMAGP-206ENST00000604188 433 ntTSL 3 BASIC19.8■□□□□ 0.76
NEK3P51956 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NEK3P51956 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
NEK3P51956 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NEK3P51956 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NEK3P51956 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.8■□□□□ 0.76
NEK3P51956 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.8■□□□□ 0.76
NEK3P51956 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NEK3P51956 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.8■□□□□ 0.76
NEK3P51956 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
NEK3P51956 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NEK3P51956 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
NEK3P51956 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC19.79■□□□□ 0.76
NEK3P51956 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NEK3P51956 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC19.79■□□□□ 0.76
NEK3P51956 AL032819.2-201ENST00000624543 2162 ntBASIC19.79■□□□□ 0.76
NEK3P51956 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NEK3P51956 YBX1P10-201ENST00000444752 975 ntBASIC19.79■□□□□ 0.76
NEK3P51956 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NEK3P51956 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC19.79■□□□□ 0.76
NEK3P51956 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
NEK3P51956 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC19.79■□□□□ 0.76
NEK3P51956 AC073195.1-201ENST00000607241 877 ntBASIC19.79■□□□□ 0.76
NEK3P51956 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NEK3P51956 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NEK3P51956 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC19.79■□□□□ 0.76
NEK3P51956 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NEK3P51956 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.79■□□□□ 0.76
NEK3P51956 RNH1-203ENST00000397604 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NEK3P51956 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC19.79■□□□□ 0.76
NEK3P51956 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
NEK3P51956 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NEK3P51956 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
NEK3P51956 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NEK3P51956 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC19.78■□□□□ 0.76
NEK3P51956 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms