Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTPN4P29074 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTPN4P29074 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTPN4P29074 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC19.27■□□□□ 0.68
PTPN4P29074 UBE2SP1-201ENST00000450587 669 ntBASIC19.27■□□□□ 0.68
PTPN4P29074 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19.27■□□□□ 0.68
PTPN4P29074 OR2A1-AS1-207ENST00000486094 819 ntBASIC19.27■□□□□ 0.68
PTPN4P29074 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
PTPN4P29074 REXO2-208ENST00000539754 791 ntTSL 2 BASIC19.27■□□□□ 0.68
PTPN4P29074 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
PTPN4P29074 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.27■□□□□ 0.68
PTPN4P29074 AL359736.2-201ENST00000621992 437 ntBASIC19.27■□□□□ 0.68
PTPN4P29074 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC19.27■□□□□ 0.68
PTPN4P29074 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.67
PTPN4P29074 AC009237.14-201ENST00000609975 1594 ntBASIC19.27■□□□□ 0.67
PTPN4P29074 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
PTPN4P29074 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.27■□□□□ 0.67
PTPN4P29074 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PTPN4P29074 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC19.26■□□□□ 0.67
PTPN4P29074 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC19.26■□□□□ 0.67
PTPN4P29074 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC19.26■□□□□ 0.67
PTPN4P29074 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
PTPN4P29074 KRT8P36-201ENST00000489121 1440 ntBASIC19.26■□□□□ 0.67
PTPN4P29074 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.26■□□□□ 0.67
PTPN4P29074 NLGN2-204ENST00000575301 4374 ntAPPRIS P1 TSL 5 BASIC19.26■□□□□ 0.67
PTPN4P29074 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTPN4P29074 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTPN4P29074 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTPN4P29074 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC19.26■□□□□ 0.67
PTPN4P29074 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PTPN4P29074 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.26■□□□□ 0.67
PTPN4P29074 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTPN4P29074 PEX7-202ENST00000367756 680 ntTSL 3 BASIC19.26■□□□□ 0.67
PTPN4P29074 IGHV3-33-201ENST00000390615 431 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
PTPN4P29074 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC19.26■□□□□ 0.67
PTPN4P29074 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.26■□□□□ 0.67
PTPN4P29074 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC19.26■□□□□ 0.67
PTPN4P29074 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC19.26■□□□□ 0.67
PTPN4P29074 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC19.26■□□□□ 0.67
PTPN4P29074 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PTPN4P29074 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTPN4P29074 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTPN4P29074 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC19.26■□□□□ 0.67
PTPN4P29074 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
PTPN4P29074 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.26■□□□□ 0.67
PTPN4P29074 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC19.26■□□□□ 0.67
PTPN4P29074 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PTPN4P29074 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
PTPN4P29074 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.26■□□□□ 0.67
PTPN4P29074 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 GOLGA2P11-201ENST00000562660 1621 ntBASIC19.25■□□□□ 0.67
PTPN4P29074 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.25■□□□□ 0.67
PTPN4P29074 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.25■□□□□ 0.67
PTPN4P29074 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.25■□□□□ 0.67
PTPN4P29074 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC19.25■□□□□ 0.67
PTPN4P29074 AC068446.2-201ENST00000500487 2165 ntTSL 2 BASIC19.25■□□□□ 0.67
PTPN4P29074 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC19.25■□□□□ 0.67
PTPN4P29074 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.25■□□□□ 0.67
PTPN4P29074 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC19.25■□□□□ 0.67
PTPN4P29074 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC19.25■□□□□ 0.67
PTPN4P29074 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.25■□□□□ 0.67
PTPN4P29074 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.25■□□□□ 0.67
PTPN4P29074 SOX15-203ENST00000570788 1093 ntBASIC19.25■□□□□ 0.67
PTPN4P29074 USP36-216ENST00000589424 970 ntTSL 5 BASIC19.25■□□□□ 0.67
PTPN4P29074 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC19.25■□□□□ 0.67
PTPN4P29074 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.25■□□□□ 0.67
PTPN4P29074 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 ASPRV1-201ENST00000320256 2177 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
PTPN4P29074 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
PTPN4P29074 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
PTPN4P29074 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
PTPN4P29074 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
PTPN4P29074 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
PTPN4P29074 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC19.24■□□□□ 0.67
PTPN4P29074 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
PTPN4P29074 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC19.24■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms