Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A2P12110 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.01■□□□□ 0.63
COL6A2P12110 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A2P12110 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC19.01■□□□□ 0.63
COL6A2P12110 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC19.01■□□□□ 0.63
COL6A2P12110 SLC29A4P2-201ENST00000504749 1089 ntBASIC19.01■□□□□ 0.63
COL6A2P12110 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC19.01■□□□□ 0.63
COL6A2P12110 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC19.01■□□□□ 0.63
COL6A2P12110 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC19.01■□□□□ 0.63
COL6A2P12110 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A2P12110 RASSF1-210ENST00000616212 1842 ntTSL 2 BASIC19.01■□□□□ 0.63
COL6A2P12110 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A2P12110 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC19.01■□□□□ 0.63
COL6A2P12110 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A2P12110 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
COL6A2P12110 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A2P12110 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A2P12110 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC19■□□□□ 0.63
COL6A2P12110 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
COL6A2P12110 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A2P12110 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL6A2P12110 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
COL6A2P12110 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
COL6A2P12110 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC19■□□□□ 0.63
COL6A2P12110 OR2A1-AS1-207ENST00000486094 819 ntBASIC19■□□□□ 0.63
COL6A2P12110 PPP1R14BP3-201ENST00000509033 445 ntBASIC19■□□□□ 0.63
COL6A2P12110 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL6A2P12110 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC19■□□□□ 0.63
COL6A2P12110 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC19■□□□□ 0.63
COL6A2P12110 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A2P12110 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL6A2P12110 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
COL6A2P12110 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19■□□□□ 0.63
COL6A2P12110 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC19■□□□□ 0.63
COL6A2P12110 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A2P12110 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A2P12110 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19■□□□□ 0.63
COL6A2P12110 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A2P12110 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
COL6A2P12110 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
COL6A2P12110 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A2P12110 PALM3-201ENST00000340790 2262 ntAPPRIS P2 TSL 5 BASIC18.99■□□□□ 0.63
COL6A2P12110 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A2P12110 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A2P12110 AP001351.1-201ENST00000501397 1865 ntTSL 2 BASIC18.99■□□□□ 0.63
COL6A2P12110 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
COL6A2P12110 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
COL6A2P12110 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A2P12110 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.99■□□□□ 0.63
COL6A2P12110 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A2P12110 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A2P12110 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC18.99■□□□□ 0.63
COL6A2P12110 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.99■□□□□ 0.63
COL6A2P12110 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.99■□□□□ 0.63
COL6A2P12110 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
COL6A2P12110 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A2P12110 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
COL6A2P12110 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A2P12110 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
COL6A2P12110 RBFOX1-204ENST00000422070 1684 ntTSL 2 BASIC18.98■□□□□ 0.63
COL6A2P12110 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
COL6A2P12110 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
COL6A2P12110 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
COL6A2P12110 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC18.98■□□□□ 0.63
COL6A2P12110 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.98■□□□□ 0.63
COL6A2P12110 LEF1-AS1-203ENST00000507799 459 ntTSL 3 BASIC18.98■□□□□ 0.63
COL6A2P12110 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC18.98■□□□□ 0.63
COL6A2P12110 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.98■□□□□ 0.63
COL6A2P12110 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
COL6A2P12110 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC18.98■□□□□ 0.63
COL6A2P12110 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.98■□□□□ 0.63
COL6A2P12110 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
COL6A2P12110 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.97■□□□□ 0.63
COL6A2P12110 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A2P12110 TSPAN4-204ENST00000397404 1462 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
COL6A2P12110 AC079598.2-202ENST00000546624 1451 ntBASIC18.97■□□□□ 0.63
COL6A2P12110 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC18.97■□□□□ 0.63
COL6A2P12110 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A2P12110 IL4I1-202ENST00000391826 1863 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A2P12110 NEFHP1-201ENST00000412845 2629 ntBASIC18.97■□□□□ 0.63
COL6A2P12110 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC18.97■□□□□ 0.63
COL6A2P12110 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL6A2P12110 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.97■□□□□ 0.63
COL6A2P12110 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.97■□□□□ 0.63
COL6A2P12110 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
COL6A2P12110 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC18.97■□□□□ 0.63
COL6A2P12110 CENPS-CORT-202ENST00000465026 494 ntTSL 3 BASIC18.97■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms