Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 RUNDC3B-207ENST00000493037 2020 ntAPPRIS ALT2 TSL 1 (best) BASIC25.5■■□□□ 1.67
CSB-PGBD3P0DP91 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC25.5■■□□□ 1.67
CSB-PGBD3P0DP91 LINC00599-204ENST00000521242 716 ntTSL 3 BASIC25.5■■□□□ 1.67
CSB-PGBD3P0DP91 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC25.5■■□□□ 1.67
CSB-PGBD3P0DP91 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC25.5■■□□□ 1.67
CSB-PGBD3P0DP91 GTF2IRD2B-210ENST00000629105 1910 ntTSL 5 BASIC25.5■■□□□ 1.67
CSB-PGBD3P0DP91 AL691432.2-201ENST00000607222 2038 ntBASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 CCDC106-201ENST00000308964 1546 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 PRELID1P1-202ENST00000567272 903 ntBASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 MIR3652-201ENST00000579335 131 ntBASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 PRR29-207ENST00000580752 458 ntTSL 3 BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC25.49■■□□□ 1.67
CSB-PGBD3P0DP91 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 NAPRT-202ENST00000426292 1654 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 DET1-207ENST00000564406 2315 ntTSL 2 BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 AC092597.1-201ENST00000487352 616 ntBASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 AC009237.14-201ENST00000609975 1594 ntBASIC25.48■■□□□ 1.67
CSB-PGBD3P0DP91 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 RASA4DP-201ENST00000460726 1199 ntBASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 AC010463.1-201ENST00000596542 1207 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 AC092329.2-201ENST00000598402 547 ntBASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC25.47■■□□□ 1.67
CSB-PGBD3P0DP91 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 NTMT1-203ENST00000372483 1315 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 ILF2-202ENST00000368681 726 ntTSL 2 BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC25.46■■□□□ 1.67
CSB-PGBD3P0DP91 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC25.45■■□□□ 1.67
CSB-PGBD3P0DP91 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.67
CSB-PGBD3P0DP91 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
CSB-PGBD3P0DP91 RHBDL1-201ENST00000219551 1560 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 S100A14-201ENST00000344616 1058 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 AC246785.2-201ENST00000432512 513 ntBASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 AC034232.1-201ENST00000506026 1064 ntBASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 SDHD-206ENST00000528182 754 ntTSL 3 BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
CSB-PGBD3P0DP91 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms