Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 RNF121-214ENST00000533380 870 ntTSL 3 BASIC22.31■■□□□ 1.16
CTDNEP1O95476 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC22.31■■□□□ 1.16
CTDNEP1O95476 ITM2C-210ENST00000620962 501 ntBASIC22.31■■□□□ 1.16
CTDNEP1O95476 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
CTDNEP1O95476 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTDNEP1O95476 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC22.31■■□□□ 1.16
CTDNEP1O95476 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC22.3■■□□□ 1.16
CTDNEP1O95476 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC22.3■■□□□ 1.16
CTDNEP1O95476 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC22.3■■□□□ 1.16
CTDNEP1O95476 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CTDNEP1O95476 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CTDNEP1O95476 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC22.3■■□□□ 1.16
CTDNEP1O95476 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CTDNEP1O95476 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CTDNEP1O95476 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC22.3■■□□□ 1.16
CTDNEP1O95476 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CTDNEP1O95476 RPS2P4-201ENST00000476944 856 ntBASIC22.3■■□□□ 1.16
CTDNEP1O95476 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC22.3■■□□□ 1.16
CTDNEP1O95476 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
CTDNEP1O95476 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC22.3■■□□□ 1.16
CTDNEP1O95476 AL359736.2-201ENST00000621992 437 ntBASIC22.3■■□□□ 1.16
CTDNEP1O95476 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC22.3■■□□□ 1.16
CTDNEP1O95476 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CTDNEP1O95476 KRT13-202ENST00000336861 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
CTDNEP1O95476 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
CTDNEP1O95476 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC22.3■■□□□ 1.16
CTDNEP1O95476 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CTDNEP1O95476 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CTDNEP1O95476 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CTDNEP1O95476 GAS2L1P1-201ENST00000420145 1480 ntBASIC22.29■■□□□ 1.16
CTDNEP1O95476 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CTDNEP1O95476 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CTDNEP1O95476 TNFRSF18-204ENST00000486728 727 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CTDNEP1O95476 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC22.29■■□□□ 1.16
CTDNEP1O95476 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC22.29■■□□□ 1.16
CTDNEP1O95476 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC22.29■■□□□ 1.16
CTDNEP1O95476 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC22.29■■□□□ 1.16
CTDNEP1O95476 AL445675.2-201ENST00000620291 557 ntBASIC22.29■■□□□ 1.16
CTDNEP1O95476 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC22.29■■□□□ 1.16
CTDNEP1O95476 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC22.29■■□□□ 1.16
CTDNEP1O95476 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC22.29■■□□□ 1.16
CTDNEP1O95476 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
CTDNEP1O95476 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC22.29■■□□□ 1.16
CTDNEP1O95476 USP39-202ENST00000409025 1946 ntTSL 5 BASIC22.29■■□□□ 1.16
CTDNEP1O95476 HTR7P1-201ENST00000538670 1336 ntBASIC22.29■■□□□ 1.16
CTDNEP1O95476 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC22.29■■□□□ 1.16
CTDNEP1O95476 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC22.28■■□□□ 1.16
CTDNEP1O95476 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 RNF165-205ENST00000588679 2904 ntBASIC22.28■■□□□ 1.16
CTDNEP1O95476 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 NIFKP9-201ENST00000419265 221 ntBASIC22.28■■□□□ 1.16
CTDNEP1O95476 AC004980.1-204ENST00000429707 299 ntBASIC22.28■■□□□ 1.16
CTDNEP1O95476 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC22.28■■□□□ 1.16
CTDNEP1O95476 FDX2-207ENST00000494368 584 ntTSL 4 BASIC22.28■■□□□ 1.16
CTDNEP1O95476 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC22.28■■□□□ 1.16
CTDNEP1O95476 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
CTDNEP1O95476 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC22.28■■□□□ 1.16
CTDNEP1O95476 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
CTDNEP1O95476 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC22.27■■□□□ 1.16
CTDNEP1O95476 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
CTDNEP1O95476 SLC6A18-201ENST00000324642 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CTDNEP1O95476 TCTN1-223ENST00000550703 2149 ntTSL 2 BASIC22.27■■□□□ 1.16
CTDNEP1O95476 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CTDNEP1O95476 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
CTDNEP1O95476 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CTDNEP1O95476 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CTDNEP1O95476 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CTDNEP1O95476 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC22.27■■□□□ 1.16
CTDNEP1O95476 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CTDNEP1O95476 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC22.27■■□□□ 1.16
CTDNEP1O95476 FAM201B-201ENST00000458407 597 ntBASIC22.27■■□□□ 1.16
CTDNEP1O95476 AC098590.1-201ENST00000468126 897 ntBASIC22.27■■□□□ 1.16
CTDNEP1O95476 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC22.27■■□□□ 1.16
CTDNEP1O95476 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC22.27■■□□□ 1.16
CTDNEP1O95476 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC22.27■■□□□ 1.16
CTDNEP1O95476 AL353708.3-201ENST00000610272 989 ntBASIC22.27■■□□□ 1.16
CTDNEP1O95476 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC22.27■■□□□ 1.16
CTDNEP1O95476 ABBA01031674.1-201ENST00000635145 728 ntBASIC22.27■■□□□ 1.16
CTDNEP1O95476 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CTDNEP1O95476 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CTDNEP1O95476 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC22.27■■□□□ 1.16
CTDNEP1O95476 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CTDNEP1O95476 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.16
CTDNEP1O95476 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
CTDNEP1O95476 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.15
CTDNEP1O95476 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC22.27■■□□□ 1.15
CTDNEP1O95476 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
CTDNEP1O95476 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
CTDNEP1O95476 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms