Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
NKX2-2O95096 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
NKX2-2O95096 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC17.77■□□□□ 0.43
NKX2-2O95096 IRX1P1-201ENST00000438849 1838 ntBASIC17.77■□□□□ 0.43
NKX2-2O95096 FP475955.4-201ENST00000623131 1990 ntBASIC17.77■□□□□ 0.43
NKX2-2O95096 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
NKX2-2O95096 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
NKX2-2O95096 AP000974.1-201ENST00000623909 2387 ntBASIC17.76■□□□□ 0.43
NKX2-2O95096 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
NKX2-2O95096 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC17.76■□□□□ 0.43
NKX2-2O95096 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX2-2O95096 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC17.76■□□□□ 0.43
NKX2-2O95096 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX2-2O95096 AL135905.2-201ENST00000584934 1404 ntBASIC17.76■□□□□ 0.43
NKX2-2O95096 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NKX2-2O95096 PEX7-202ENST00000367756 680 ntTSL 3 BASIC17.76■□□□□ 0.43
NKX2-2O95096 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX2-2O95096 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX2-2O95096 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC17.76■□□□□ 0.43
NKX2-2O95096 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC17.76■□□□□ 0.43
NKX2-2O95096 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NKX2-2O95096 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX2-2O95096 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NKX2-2O95096 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC17.76■□□□□ 0.43
NKX2-2O95096 EFTUD1P1-201ENST00000558187 596 ntTSL 4 BASIC17.76■□□□□ 0.43
NKX2-2O95096 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC17.76■□□□□ 0.43
NKX2-2O95096 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC17.76■□□□□ 0.43
NKX2-2O95096 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC17.76■□□□□ 0.43
NKX2-2O95096 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
NKX2-2O95096 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC17.76■□□□□ 0.43
NKX2-2O95096 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.76■□□□□ 0.43
NKX2-2O95096 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
NKX2-2O95096 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
NKX2-2O95096 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
NKX2-2O95096 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC17.76■□□□□ 0.43
NKX2-2O95096 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NKX2-2O95096 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NKX2-2O95096 SNRPN-207ENST00000554227 1763 ntTSL 5 BASIC17.76■□□□□ 0.43
NKX2-2O95096 RETREG2-203ENST00000430297 4618 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX2-2O95096 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NKX2-2O95096 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
NKX2-2O95096 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC17.75■□□□□ 0.43
NKX2-2O95096 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.75■□□□□ 0.43
NKX2-2O95096 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 FEM1AP3-201ENST00000403722 1741 ntBASIC17.75■□□□□ 0.43
NKX2-2O95096 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC17.75■□□□□ 0.43
NKX2-2O95096 LINC01356-201ENST00000401018 1819 ntTSL 2 BASIC17.75■□□□□ 0.43
NKX2-2O95096 UBQLN4P1-201ENST00000461599 1801 ntBASIC17.75■□□□□ 0.43
NKX2-2O95096 KRT16P1-201ENST00000399124 1418 ntBASIC17.75■□□□□ 0.43
NKX2-2O95096 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
NKX2-2O95096 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.75■□□□□ 0.43
NKX2-2O95096 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
NKX2-2O95096 TSPY23P-201ENST00000440136 739 ntBASIC17.75■□□□□ 0.43
NKX2-2O95096 AL158047.1-201ENST00000445918 881 ntBASIC17.75■□□□□ 0.43
NKX2-2O95096 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC17.75■□□□□ 0.43
NKX2-2O95096 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.75■□□□□ 0.43
NKX2-2O95096 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
NKX2-2O95096 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
NKX2-2O95096 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
NKX2-2O95096 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC17.75■□□□□ 0.43
NKX2-2O95096 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.75■□□□□ 0.43
NKX2-2O95096 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
NKX2-2O95096 AC098818.2-201ENST00000564925 2320 ntBASIC17.75■□□□□ 0.43
NKX2-2O95096 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NKX2-2O95096 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
NKX2-2O95096 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-2O95096 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-2O95096 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-2O95096 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.74■□□□□ 0.43
NKX2-2O95096 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC17.74■□□□□ 0.43
NKX2-2O95096 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-2O95096 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC17.74■□□□□ 0.43
NKX2-2O95096 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
NKX2-2O95096 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
NKX2-2O95096 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
NKX2-2O95096 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-2O95096 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-2O95096 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-2O95096 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
NKX2-2O95096 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
NKX2-2O95096 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC17.74■□□□□ 0.43
NKX2-2O95096 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-2O95096 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.74■□□□□ 0.43
NKX2-2O95096 RPS15-203ENST00000586096 570 ntTSL 2 BASIC17.74■□□□□ 0.43
NKX2-2O95096 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
NKX2-2O95096 ABBA01031674.1-201ENST00000635145 728 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 21.6 ms