Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.42■□□□□ 0.54
SEMA3DO95025 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.41■□□□□ 0.54
SEMA3DO95025 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC18.41■□□□□ 0.54
SEMA3DO95025 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.41■□□□□ 0.54
SEMA3DO95025 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SEMA3DO95025 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SEMA3DO95025 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SEMA3DO95025 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SEMA3DO95025 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SEMA3DO95025 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC18.41■□□□□ 0.54
SEMA3DO95025 SDHAP1-207ENST00000440850 2000 ntBASIC18.41■□□□□ 0.54
SEMA3DO95025 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.41■□□□□ 0.54
SEMA3DO95025 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.41■□□□□ 0.54
SEMA3DO95025 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.41■□□□□ 0.54
SEMA3DO95025 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SEMA3DO95025 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC18.41■□□□□ 0.54
SEMA3DO95025 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.41■□□□□ 0.54
SEMA3DO95025 MIR4651-201ENST00000582622 73 ntBASIC18.41■□□□□ 0.54
SEMA3DO95025 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SEMA3DO95025 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SEMA3DO95025 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.41■□□□□ 0.54
SEMA3DO95025 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.41■□□□□ 0.54
SEMA3DO95025 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC18.41■□□□□ 0.54
SEMA3DO95025 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SEMA3DO95025 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SEMA3DO95025 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
SEMA3DO95025 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SEMA3DO95025 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SEMA3DO95025 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
SEMA3DO95025 TEX21P-204ENST00000641479 1693 ntBASIC18.41■□□□□ 0.54
SEMA3DO95025 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.4■□□□□ 0.54
SEMA3DO95025 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
SEMA3DO95025 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
SEMA3DO95025 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.4■□□□□ 0.54
SEMA3DO95025 MTFP1-203ENST00000407550 912 ntTSL 2 BASIC18.4■□□□□ 0.54
SEMA3DO95025 AC128676.1-201ENST00000454392 318 ntBASIC18.4■□□□□ 0.54
SEMA3DO95025 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC18.4■□□□□ 0.54
SEMA3DO95025 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SEMA3DO95025 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.4■□□□□ 0.54
SEMA3DO95025 AC110285.5-201ENST00000611501 352 ntBASIC18.4■□□□□ 0.54
SEMA3DO95025 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 AC098818.2-201ENST00000564925 2320 ntBASIC18.4■□□□□ 0.54
SEMA3DO95025 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC18.4■□□□□ 0.54
SEMA3DO95025 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
SEMA3DO95025 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SEMA3DO95025 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.4■□□□□ 0.54
SEMA3DO95025 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC18.39■□□□□ 0.54
SEMA3DO95025 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SEMA3DO95025 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
SEMA3DO95025 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
SEMA3DO95025 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SEMA3DO95025 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.39■□□□□ 0.53
SEMA3DO95025 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
SEMA3DO95025 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SEMA3DO95025 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC18.39■□□□□ 0.53
SEMA3DO95025 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 SUMO2-203ENST00000578238 490 ntTSL 2 BASIC18.39■□□□□ 0.53
SEMA3DO95025 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.39■□□□□ 0.53
SEMA3DO95025 HLA-A-209ENST00000638375 975 ntBASIC18.39■□□□□ 0.53
SEMA3DO95025 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SEMA3DO95025 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SEMA3DO95025 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SEMA3DO95025 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.39■□□□□ 0.53
SEMA3DO95025 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SEMA3DO95025 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SEMA3DO95025 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.39■□□□□ 0.53
SEMA3DO95025 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SEMA3DO95025 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.38■□□□□ 0.53
SEMA3DO95025 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms