Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4BO75351 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4BO75351 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS4BO75351 ABHD17AP6-201ENST00000458502 1044 ntBASIC18.84■□□□□ 0.61
VPS4BO75351 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
VPS4BO75351 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4BO75351 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4BO75351 PNMA6B-201ENST00000538162 1200 ntBASIC18.84■□□□□ 0.61
VPS4BO75351 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4BO75351 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4BO75351 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS4BO75351 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4BO75351 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS4BO75351 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4BO75351 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
VPS4BO75351 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4BO75351 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4BO75351 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC18.84■□□□□ 0.61
VPS4BO75351 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS4BO75351 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
VPS4BO75351 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC18.84■□□□□ 0.61
VPS4BO75351 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VPS4BO75351 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.84■□□□□ 0.61
VPS4BO75351 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS4BO75351 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.61
VPS4BO75351 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS4BO75351 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC18.83■□□□□ 0.61
VPS4BO75351 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.61
VPS4BO75351 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.83■□□□□ 0.61
VPS4BO75351 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS4BO75351 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS4BO75351 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
VPS4BO75351 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.61
VPS4BO75351 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS4BO75351 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
VPS4BO75351 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS4BO75351 BX088651.1-201ENST00000540551 451 ntBASIC18.83■□□□□ 0.6
VPS4BO75351 IRF3-222ENST00000599144 1117 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS4BO75351 ATRAID-208ENST00000611786 1256 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS4BO75351 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC18.83■□□□□ 0.6
VPS4BO75351 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS4BO75351 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VPS4BO75351 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VPS4BO75351 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
VPS4BO75351 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC18.82■□□□□ 0.6
VPS4BO75351 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS4BO75351 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS4BO75351 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VPS4BO75351 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS4BO75351 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
VPS4BO75351 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS4BO75351 AC141586.3-201ENST00000562166 1838 ntBASIC18.82■□□□□ 0.6
VPS4BO75351 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC18.82■□□□□ 0.6
VPS4BO75351 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS4BO75351 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS4BO75351 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC18.82■□□□□ 0.6
VPS4BO75351 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS4BO75351 TCERG1L-201ENST00000368642 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.82■□□□□ 0.6
VPS4BO75351 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VPS4BO75351 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.82■□□□□ 0.6
VPS4BO75351 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VPS4BO75351 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 MOK-233ENST00000524214 1539 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS4BO75351 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 RNF146-203ENST00000368314 2369 ntAPPRIS ALT1 TSL 2 BASIC18.81■□□□□ 0.6
VPS4BO75351 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS4BO75351 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS4BO75351 OR2A1-AS1-207ENST00000486094 819 ntBASIC18.81■□□□□ 0.6
VPS4BO75351 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS4BO75351 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS4BO75351 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS4BO75351 TFP1-202ENST00000475455 1573 ntBASIC18.81■□□□□ 0.6
VPS4BO75351 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS4BO75351 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms