Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 DGCR10-201ENST00000609839 495 ntBASIC21.03■□□□□ 0.96
CLDN3O15551 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC21.03■□□□□ 0.96
CLDN3O15551 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN3O15551 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN3O15551 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN3O15551 KRT8P41-201ENST00000533985 1514 ntBASIC21.03■□□□□ 0.96
CLDN3O15551 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CLDN3O15551 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN3O15551 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC21.02■□□□□ 0.96
CLDN3O15551 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CLDN3O15551 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN3O15551 AC079598.2-202ENST00000546624 1451 ntBASIC21.02■□□□□ 0.96
CLDN3O15551 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
CLDN3O15551 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN3O15551 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN3O15551 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN3O15551 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
CLDN3O15551 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CLDN3O15551 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
CLDN3O15551 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC21.02■□□□□ 0.96
CLDN3O15551 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC21.02■□□□□ 0.96
CLDN3O15551 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC21.02■□□□□ 0.96
CLDN3O15551 AC008040.2-201ENST00000461049 708 ntBASIC21.02■□□□□ 0.96
CLDN3O15551 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN3O15551 AP000525.1-201ENST00000608286 694 ntBASIC21.02■□□□□ 0.96
CLDN3O15551 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC21.02■□□□□ 0.96
CLDN3O15551 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN3O15551 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN3O15551 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
CLDN3O15551 SDHAP1-207ENST00000440850 2000 ntBASIC21.02■□□□□ 0.96
CLDN3O15551 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC21.02■□□□□ 0.95
CLDN3O15551 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
CLDN3O15551 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.01■□□□□ 0.95
CLDN3O15551 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC21.01■□□□□ 0.95
CLDN3O15551 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC21.01■□□□□ 0.95
CLDN3O15551 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
CLDN3O15551 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC21.01■□□□□ 0.95
CLDN3O15551 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN3O15551 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN3O15551 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.01■□□□□ 0.95
CLDN3O15551 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN3O15551 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN3O15551 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN3O15551 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN3O15551 FAM207BP-201ENST00000447172 505 ntBASIC21.01■□□□□ 0.95
CLDN3O15551 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC21.01■□□□□ 0.95
CLDN3O15551 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN3O15551 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.01■□□□□ 0.95
CLDN3O15551 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.01■□□□□ 0.95
CLDN3O15551 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC21.01■□□□□ 0.95
CLDN3O15551 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC21.01■□□□□ 0.95
CLDN3O15551 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
CLDN3O15551 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC21.01■□□□□ 0.95
CLDN3O15551 GRAMD4P8-201ENST00000605465 1115 ntBASIC21.01■□□□□ 0.95
CLDN3O15551 AP000692.2-201ENST00000608391 879 ntBASIC21.01■□□□□ 0.95
CLDN3O15551 AC073912.3-201ENST00000624414 853 ntBASIC21.01■□□□□ 0.95
CLDN3O15551 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC21.01■□□□□ 0.95
CLDN3O15551 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC21.01■□□□□ 0.95
CLDN3O15551 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC21.01■□□□□ 0.95
CLDN3O15551 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21■□□□□ 0.95
CLDN3O15551 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC21■□□□□ 0.95
CLDN3O15551 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CLDN3O15551 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLDN3O15551 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC21■□□□□ 0.95
CLDN3O15551 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
CLDN3O15551 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLDN3O15551 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLDN3O15551 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CLDN3O15551 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC21■□□□□ 0.95
CLDN3O15551 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLDN3O15551 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC21■□□□□ 0.95
CLDN3O15551 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC21■□□□□ 0.95
CLDN3O15551 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
CLDN3O15551 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
CLDN3O15551 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLDN3O15551 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
CLDN3O15551 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CLDN3O15551 TP73-202ENST00000354437 2140 ntTSL 5 BASIC20.99■□□□□ 0.95
CLDN3O15551 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN3O15551 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN3O15551 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN3O15551 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN3O15551 SLC25A39-202ENST00000377095 1565 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN3O15551 GRK2-201ENST00000308595 3466 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN3O15551 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN3O15551 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
CLDN3O15551 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CLDN3O15551 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN3O15551 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC20.99■□□□□ 0.95
CLDN3O15551 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN3O15551 AC097488.1-201ENST00000507834 756 ntBASIC20.99■□□□□ 0.95
CLDN3O15551 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.99■□□□□ 0.95
CLDN3O15551 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC20.99■□□□□ 0.95
CLDN3O15551 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.99■□□□□ 0.95
CLDN3O15551 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
CLDN3O15551 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN3O15551 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
CLDN3O15551 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.99■□□□□ 0.95
CLDN3O15551 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
CLDN3O15551 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms