Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 ANKRD18DP-204ENST00000455355 1975 ntBASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 AC012414.5-201ENST00000564214 1602 ntTSL 5 BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 AL109923.1-201ENST00000618799 583 ntBASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 MARK2-201ENST00000350490 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CPSF4LA6NMK7 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 HAUS4-204ENST00000490506 1447 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 AC120498.8-201ENST00000614275 531 ntBASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CPSF4LA6NMK7 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 EDN3-204ENST00000371028 2397 ntAPPRIS P4 TSL 5 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 AGER-207ENST00000375076 1492 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 MRPS26-201ENST00000380325 1127 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CPSF4LA6NMK7 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 AC008687.6-201ENST00000596318 630 ntBASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 ERLIN2-202ENST00000335171 1742 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CPSF4LA6NMK7 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms