Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 Z99755.1-201ENST00000414048 380 ntBASIC5.86□□□□□ -1.47
MSX1P28360 AFDN-AS1-202ENST00000417244 182 ntTSL 2 BASIC5.86□□□□□ -1.47
MSX1P28360 AC243428.1-201ENST00000421099 264 ntBASIC5.86□□□□□ -1.47
MSX1P28360 AL590632.1-201ENST00000424289 371 ntBASIC5.86□□□□□ -1.47
MSX1P28360 SDAD1P3-201ENST00000427380 333 ntBASIC5.86□□□□□ -1.47
MSX1P28360 AC099799.1-201ENST00000439809 192 ntBASIC5.86□□□□□ -1.47
MSX1P28360 AL353752.1-201ENST00000454946 260 ntBASIC5.86□□□□□ -1.47
MSX1P28360 Z83838.1-202ENST00000456225 839 ntBASIC5.86□□□□□ -1.47
MSX1P28360 SNORD121B-201ENST00000458838 81 ntBASIC5.86□□□□□ -1.47
MSX1P28360 DYNLL1P5-201ENST00000467158 270 ntBASIC5.86□□□□□ -1.47
MSX1P28360 RPS23P3-201ENST00000470993 430 ntBASIC5.86□□□□□ -1.47
MSX1P28360 AC022215.1-201ENST00000481770 362 ntBASIC5.86□□□□□ -1.47
MSX1P28360 CBX1-205ENST00000495350 550 ntTSL 2 BASIC5.86□□□□□ -1.47
MSX1P28360 AP002812.1-201ENST00000495378 474 ntBASIC5.86□□□□□ -1.47
MSX1P28360 AC069360.1-201ENST00000503469 431 ntTSL 2 BASIC5.86□□□□□ -1.47
MSX1P28360 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC5.86□□□□□ -1.47
MSX1P28360 RNU6-307P-201ENST00000516743 106 ntBASIC5.86□□□□□ -1.47
MSX1P28360 AL133399.1-201ENST00000527476 298 ntBASIC5.86□□□□□ -1.47
MSX1P28360 AP004609.2-201ENST00000532177 190 ntBASIC5.86□□□□□ -1.47
MSX1P28360 TMEM106C-215ENST00000550552 776 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSX1P28360 AC090115.3-201ENST00000553218 849 ntBASIC5.86□□□□□ -1.47
MSX1P28360 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC5.86□□□□□ -1.47
MSX1P28360 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC5.86□□□□□ -1.47
MSX1P28360 AC026471.4-201ENST00000569291 449 ntTSL 5 BASIC5.86□□□□□ -1.47
MSX1P28360 AL391422.2-201ENST00000602854 361 ntTSL 2 BASIC5.86□□□□□ -1.47
MSX1P28360 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC5.86□□□□□ -1.47
MSX1P28360 AL136313.1-201ENST00000624804 202 ntBASIC5.86□□□□□ -1.47
MSX1P28360 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC5.86□□□□□ -1.47
MSX1P28360 KIAA2012-204ENST00000498697 3772 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
MSX1P28360 ZNF329-201ENST00000358067 3290 ntAPPRIS P1 TSL 2 BASIC5.86□□□□□ -1.47
MSX1P28360 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSX1P28360 FMN1-212ENST00000616417 13529 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
MSX1P28360 FGF1-216ENST00000621536 4062 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX1P28360 HECTD4-211ENST00000550722 15450 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
MSX1P28360 HMG20A-201ENST00000336216 4046 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX1P28360 ZC3H14-205ENST00000393514 2195 ntTSL 5 BASIC5.86□□□□□ -1.47
MSX1P28360 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX1P28360 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX1P28360 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC5.86□□□□□ -1.47
MSX1P28360 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
MSX1P28360 WDR72-208ENST00000614174 4224 ntTSL 2 BASIC5.85□□□□□ -1.47
MSX1P28360 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX1P28360 FOXP2-209ENST00000393498 2617 ntTSL 5 BASIC5.85□□□□□ -1.47
MSX1P28360 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC5.85□□□□□ -1.47
MSX1P28360 LINC01138-208ENST00000639159 1521 ntTSL 5 BASIC5.85□□□□□ -1.47
MSX1P28360 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX1P28360 RBMS2-201ENST00000262031 8382 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSX1P28360 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX1P28360 CASP10-202ENST00000286186 5928 ntAPPRIS P4 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSX1P28360 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
MSX1P28360 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSX1P28360 RN7SKP186-201ENST00000365371 303 ntBASIC5.85□□□□□ -1.47
MSX1P28360 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC5.85□□□□□ -1.47
MSX1P28360 AC005522.1-201ENST00000395416 346 ntBASIC5.85□□□□□ -1.47
MSX1P28360 HORMAD2-202ENST00000403975 2115 ntAPPRIS P1 TSL 2 BASIC5.85□□□□□ -1.47
MSX1P28360 SNORA11B-201ENST00000408175 129 ntBASIC5.85□□□□□ -1.47
MSX1P28360 RN7SKP281-201ENST00000410472 352 ntBASIC5.85□□□□□ -1.47
MSX1P28360 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.85□□□□□ -1.47
MSX1P28360 AL162384.1-201ENST00000437881 499 ntTSL 2 BASIC5.85□□□□□ -1.47
MSX1P28360 AL353768.1-201ENST00000439872 487 ntTSL 3 BASIC5.85□□□□□ -1.47
MSX1P28360 SNORD5.1-201ENST00000458800 75 ntBASIC5.85□□□□□ -1.47
MSX1P28360 RPS3AP41-201ENST00000462701 778 ntBASIC5.85□□□□□ -1.47
MSX1P28360 RN7SL221P-201ENST00000466190 281 ntBASIC5.85□□□□□ -1.47
MSX1P28360 RN7SL643P-201ENST00000471845 291 ntBASIC5.85□□□□□ -1.47
MSX1P28360 AC114801.2-201ENST00000503825 781 ntBASIC5.85□□□□□ -1.47
MSX1P28360 AC009901.1-201ENST00000506703 541 ntBASIC5.85□□□□□ -1.47
MSX1P28360 TBCAP3-201ENST00000512475 312 ntBASIC5.85□□□□□ -1.47
MSX1P28360 AC092542.1-201ENST00000513155 355 ntTSL 2 BASIC5.85□□□□□ -1.47
MSX1P28360 RNU6-1069P-201ENST00000516612 133 ntBASIC5.85□□□□□ -1.47
MSX1P28360 RNA5SP384-201ENST00000516615 116 ntBASIC5.85□□□□□ -1.47
MSX1P28360 IGHV3-76-201ENST00000522465 295 ntBASIC5.85□□□□□ -1.47
MSX1P28360 CYCSP25-201ENST00000525280 316 ntBASIC5.85□□□□□ -1.47
MSX1P28360 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.85□□□□□ -1.47
MSX1P28360 TPRX1P1-201ENST00000557620 319 ntBASIC5.85□□□□□ -1.47
MSX1P28360 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.85□□□□□ -1.47
MSX1P28360 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.85□□□□□ -1.47
MSX1P28360 HMGB3P26-201ENST00000560051 582 ntBASIC5.85□□□□□ -1.47
MSX1P28360 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX1P28360 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC5.85□□□□□ -1.47
MSX1P28360 AC110743.1-201ENST00000584870 478 ntBASIC5.85□□□□□ -1.47
MSX1P28360 AC006254.3-201ENST00000603353 884 ntBASIC5.85□□□□□ -1.47
MSX1P28360 RPL12P48-201ENST00000605620 304 ntBASIC5.85□□□□□ -1.47
MSX1P28360 U2.17-201ENST00000611454 95 ntBASIC5.85□□□□□ -1.47
MSX1P28360 TCL6_3.1-201ENST00000619064 137 ntBASIC5.85□□□□□ -1.47
MSX1P28360 LINC02019-201ENST00000608605 2060 ntBASIC5.85□□□□□ -1.47
MSX1P28360 ZNF484-202ENST00000375495 2867 ntAPPRIS P3 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSX1P28360 AC092724.1-201ENST00000624623 3397 ntBASIC5.85□□□□□ -1.47
MSX1P28360 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX1P28360 TTN-AS1-203ENST00000419746 4592 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX1P28360 AC022905.1-201ENST00000503430 3048 ntBASIC5.85□□□□□ -1.47
MSX1P28360 CLCC1-205ENST00000369969 4343 ntTSL 5 BASIC5.85□□□□□ -1.47
MSX1P28360 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.84□□□□□ -1.47
MSX1P28360 USP46-202ENST00000451218 4622 ntTSL 5 BASIC5.84□□□□□ -1.47
MSX1P28360 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC5.84□□□□□ -1.47
MSX1P28360 ZNF33CP-201ENST00000432492 2030 ntBASIC5.84□□□□□ -1.47
MSX1P28360 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
MSX1P28360 PGBD4-201ENST00000397766 6612 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
MSX1P28360 AL445437.1-201ENST00000623157 3087 ntBASIC5.84□□□□□ -1.47
MSX1P28360 OR51E1-201ENST00000396952 3612 ntAPPRIS P1 BASIC5.84□□□□□ -1.47
MSX1P28360 CDC42SE2-201ENST00000360515 3591 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 79.1 ms