Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AC015911.5-201ENST00000587076 451 ntBASIC4.77□□□□□ -1.65
CUX1P39880 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC4.77□□□□□ -1.65
CUX1P39880 C6orf10-209ENST00000612031 2179 ntAPPRIS ALT2 TSL 5 BASIC4.77□□□□□ -1.65
CUX1P39880 AL365396.1-201ENST00000430854 671 ntBASIC4.77□□□□□ -1.65
CUX1P39880 AC007099.2-201ENST00000444852 336 ntTSL 5 BASIC4.77□□□□□ -1.65
CUX1P39880 EEF1B2P7-201ENST00000451177 676 ntBASIC4.77□□□□□ -1.65
CUX1P39880 AC090525.1-201ENST00000479116 478 ntBASIC4.77□□□□□ -1.65
CUX1P39880 AC078909.1-201ENST00000559509 464 ntTSL 2 BASIC4.77□□□□□ -1.65
CUX1P39880 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC4.77□□□□□ -1.65
CUX1P39880 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
CUX1P39880 AL365361.1-201ENST00000566942 3481 ntBASIC4.76□□□□□ -1.65
CUX1P39880 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
CUX1P39880 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
CUX1P39880 AL356057.3-201ENST00000402607 340 ntBASIC4.76□□□□□ -1.65
CUX1P39880 AP001599.1-201ENST00000426771 361 ntTSL 3 BASIC4.76□□□□□ -1.65
CUX1P39880 RPS26P40-201ENST00000435209 294 ntBASIC4.76□□□□□ -1.65
CUX1P39880 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC4.76□□□□□ -1.65
CUX1P39880 AC103952.1-201ENST00000521872 590 ntTSL 3 BASIC4.76□□□□□ -1.65
CUX1P39880 AC027176.1-201ENST00000560204 514 ntBASIC4.76□□□□□ -1.65
CUX1P39880 RN7SL371P-201ENST00000578099 267 ntBASIC4.76□□□□□ -1.65
CUX1P39880 AC008703.1-201ENST00000637629 1174 ntTSL 5 BASIC4.76□□□□□ -1.65
CUX1P39880 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
CUX1P39880 SLC38A9-201ENST00000318672 2369 ntAPPRIS P1 TSL 2 BASIC4.75□□□□□ -1.65
CUX1P39880 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC4.75□□□□□ -1.65
CUX1P39880 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CUX1P39880 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
CUX1P39880 CRLS1-202ENST00000378868 994 ntTSL 5 BASIC4.75□□□□□ -1.65
CUX1P39880 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
CUX1P39880 AC126121.1-201ENST00000482313 553 ntBASIC4.75□□□□□ -1.65
CUX1P39880 TMEM68-214ENST00000523073 536 ntTSL 3 BASIC4.75□□□□□ -1.65
CUX1P39880 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC4.75□□□□□ -1.65
CUX1P39880 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC4.74□□□□□ -1.65
CUX1P39880 LY96-201ENST00000284818 607 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
CUX1P39880 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
CUX1P39880 RSL24D1P4-201ENST00000400938 484 ntBASIC4.74□□□□□ -1.65
CUX1P39880 LINC00279-201ENST00000413486 473 ntTSL 3 BASIC4.74□□□□□ -1.65
CUX1P39880 AC026320.1-202ENST00000444729 672 ntTSL 3 BASIC4.74□□□□□ -1.65
CUX1P39880 AC099520.1-202ENST00000503650 777 ntTSL 3 BASIC4.74□□□□□ -1.65
CUX1P39880 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CUX1P39880 MIR6817-201ENST00000615588 66 ntBASIC4.74□□□□□ -1.65
CUX1P39880 AL356490.1-201ENST00000623079 479 ntBASIC4.74□□□□□ -1.65
CUX1P39880 SELENOI-201ENST00000260585 8101 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
CUX1P39880 CHM-205ENST00000615443 2821 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
CUX1P39880 ARHGAP28-204ENST00000419673 5492 ntAPPRIS P2 TSL 1 (best) BASIC4.74□□□□□ -1.65
CUX1P39880 RNA5SP296-201ENST00000410523 111 ntBASIC4.73□□□□□ -1.65
CUX1P39880 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.73□□□□□ -1.65
CUX1P39880 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC4.73□□□□□ -1.65
CUX1P39880 HSD52-202ENST00000436225 772 ntTSL 3 BASIC4.73□□□□□ -1.65
CUX1P39880 FABP5P12-201ENST00000515543 389 ntBASIC4.73□□□□□ -1.65
CUX1P39880 AL591516.1-201ENST00000611326 274 ntBASIC4.73□□□□□ -1.65
CUX1P39880 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC4.73□□□□□ -1.65
CUX1P39880 RPAP3-202ENST00000380650 2149 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CUX1P39880 AL031985.3-201ENST00000565390 2449 ntBASIC4.73□□□□□ -1.65
CUX1P39880 NEDD4-201ENST00000338963 7019 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CUX1P39880 LINC01247-201ENST00000448901 4209 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
CUX1P39880 PHC3-215ENST00000495893 12666 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CUX1P39880 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CUX1P39880 BTAF1-204ENST00000544642 6938 ntAPPRIS ALT1 TSL 5 BASIC4.73□□□□□ -1.65
CUX1P39880 G2E3-201ENST00000206595 5804 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
CUX1P39880 NPM1P11-201ENST00000417106 855 ntBASIC4.72□□□□□ -1.65
CUX1P39880 FAR1P1-201ENST00000427163 934 ntBASIC4.72□□□□□ -1.65
CUX1P39880 LINC01828-202ENST00000450294 955 ntTSL 5 BASIC4.72□□□□□ -1.65
CUX1P39880 AL513124.1-201ENST00000450410 614 ntBASIC4.72□□□□□ -1.65
CUX1P39880 AC006539.3-201ENST00000454258 129 ntBASIC4.72□□□□□ -1.65
CUX1P39880 IGLVIV-53-201ENST00000520107 367 ntBASIC4.72□□□□□ -1.65
CUX1P39880 SERPINE4P-201ENST00000554978 281 ntBASIC4.72□□□□□ -1.65
CUX1P39880 AC022809.1-201ENST00000579247 428 ntTSL 3 BASIC4.72□□□□□ -1.65
CUX1P39880 AC026790.2-201ENST00000606282 430 ntBASIC4.72□□□□□ -1.65
CUX1P39880 AJ009632.2-205ENST00000635225 1169 ntTSL 5 BASIC4.72□□□□□ -1.65
CUX1P39880 LINC02493-201ENST00000509964 1704 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CUX1P39880 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC4.72□□□□□ -1.65
CUX1P39880 HSPA4L-202ENST00000505726 2639 ntTSL 2 BASIC4.72□□□□□ -1.65
CUX1P39880 RNU1-75P-201ENST00000347264 129 ntBASIC4.72□□□□□ -1.65
CUX1P39880 MIR887-201ENST00000401258 79 ntBASIC4.72□□□□□ -1.65
CUX1P39880 AC100848.1-201ENST00000417298 637 ntTSL 3 BASIC4.72□□□□□ -1.65
CUX1P39880 LINC01799-202ENST00000426260 625 ntTSL 3 BASIC4.72□□□□□ -1.65
CUX1P39880 AL080316.1-201ENST00000432438 499 ntTSL 2 BASIC4.72□□□□□ -1.65
CUX1P39880 TRBV12-1-201ENST00000479785 344 ntBASIC4.72□□□□□ -1.65
CUX1P39880 SATB1-216ENST00000491519 1000 ntTSL 2 BASIC4.72□□□□□ -1.65
CUX1P39880 LINC00971-203ENST00000491849 452 ntTSL 3 BASIC4.72□□□□□ -1.65
CUX1P39880 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC4.72□□□□□ -1.65
CUX1P39880 AC124242.1-205ENST00000517798 646 ntTSL 5 BASIC4.72□□□□□ -1.65
CUX1P39880 AC027018.1-201ENST00000533978 396 ntTSL 4 BASIC4.72□□□□□ -1.65
CUX1P39880 VN1R78P-201ENST00000597393 564 ntBASIC4.72□□□□□ -1.65
CUX1P39880 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC4.72□□□□□ -1.65
CUX1P39880 ING3-205ENST00000445699 1723 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
CUX1P39880 KYNU-202ENST00000375773 1772 ntTSL 1 (best) BASIC4.71□□□□□ -1.65
CUX1P39880 ELL2P4-201ENST00000446870 1376 ntBASIC4.71□□□□□ -1.65
CUX1P39880 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC4.71□□□□□ -1.66
CUX1P39880 CABS1-201ENST00000273936 1532 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
CUX1P39880 SLC38A11-204ENST00000409662 1542 ntAPPRIS P2 TSL 1 (best) BASIC4.71□□□□□ -1.66
CUX1P39880 SNORA70B-201ENST00000384210 135 ntBASIC4.71□□□□□ -1.66
CUX1P39880 MIR196B-201ENST00000384852 84 ntBASIC4.71□□□□□ -1.66
CUX1P39880 MIR184-201ENST00000384962 84 ntBASIC4.71□□□□□ -1.66
CUX1P39880 GLS-203ENST00000409215 632 ntTSL 4 BASIC4.71□□□□□ -1.66
CUX1P39880 AC006960.1-201ENST00000419980 153 ntBASIC4.71□□□□□ -1.66
CUX1P39880 RPL23AP4-201ENST00000427757 463 ntBASIC4.71□□□□□ -1.66
CUX1P39880 MTCO1P52-201ENST00000433928 531 ntBASIC4.71□□□□□ -1.66
CUX1P39880 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC4.71□□□□□ -1.66
CUX1P39880 HOMER1-205ENST00000535690 642 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms