RNA–Protein interactions for RNA: ENST00000495893.6

PHC3-215, Transcript of polyhomeotic homolog 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PHC3, Length 12,666 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHC3-215ENST00000495893 NISCHQ9Y2I1 1504 aa6.67□□□□□ -1.34
PHC3-215ENST00000495893 MYT1Q01538 1121 aa6.54□□□□□ -1.36
PHC3-215ENST00000495893 PELP1Q8IZL8 1130 aaKnown RBP6.45□□□□□ -1.38
PHC3-215ENST00000495893 DCAF8L2P0C7V8 631 aa6.12□□□□□ -1.43
PHC3-215ENST00000495893 CCER1Q8TC90 406 aaPredicted RBP6.11□□□□□ -1.43
PHC3-215ENST00000495893 TTBK1Q5TCY1 1321 aaPredicted RBP6.1□□□□□ -1.43
PHC3-215ENST00000495893 ERICH6Q7L0X2 663 aa6.09□□□□□ -1.43
PHC3-215ENST00000495893 CCDC180Q9P1Z9 1646 aa6.03□□□□□ -1.44
PHC3-215ENST00000495893 YTHDC1Q96MU7 727 aaKnown RBP6.03□□□□□ -1.44
PHC3-215ENST00000495893 CENPBP07199 599 aaPredicted RBP5.98□□□□□ -1.45
PHC3-215ENST00000495893 ABCC9O60706 1549 aa5.91□□□□□ -1.46
PHC3-215ENST00000495893 RB1CC1Q8TDY2 1594 aa5.86□□□□□ -1.47
PHC3-215ENST00000495893 ZEB1P37275 1124 aaPredicted RBP5.84□□□□□ -1.47
PHC3-215ENST00000495893 FAM9AQ8IZU1 332 aaPredicted RBP5.82□□□□□ -1.48
PHC3-215ENST00000495893 NEFLP07196 543 aa5.79□□□□□ -1.48
PHC3-215ENST00000495893 NACADO15069 1562 aa5.77□□□□□ -1.49
PHC3-215ENST00000495893 SHROOM4Q9ULL8 1493 aa5.72□□□□□ -1.49
PHC3-215ENST00000495893 DAXXQ9UER7 740 aaPredicted RBP5.7□□□□□ -1.5
PHC3-215ENST00000495893 GLIPR1L2Q4G1C9 344 aa5.69□□□□□ -1.5
PHC3-215ENST00000495893 RTL5Q5HYW3 569 aaPredicted RBP5.68□□□□□ -1.5
PHC3-215ENST00000495893 MYO15BQ96JP2 1530 aa5.65□□□□□ -1.5
PHC3-215ENST00000495893 APLP2Q06481 763 aa5.61□□□□□ -1.51
PHC3-215ENST00000495893 PCGF6Q9BYE7 350 aa5.59□□□□□ -1.51
PHC3-215ENST00000495893 RANGAP1P46060 587 aaPredicted RBP5.58□□□□□ -1.52
PHC3-215ENST00000495893 DCAF1Q9Y4B6 1507 aa5.57□□□□□ -1.52
PHC3-215ENST00000495893 SUPT5HO00267 1087 aaKnown RBP5.56□□□□□ -1.52
PHC3-215ENST00000495893 MYT1LQ9UL68 1186 aa5.56□□□□□ -1.52
PHC3-215ENST00000495893 ZNF316A6NFI3 1004 aaPredicted RBP5.55□□□□□ -1.52
PHC3-215ENST00000495893 EHMT2Q96KQ7 1210 aa5.54□□□□□ -1.52
PHC3-215ENST00000495893 ZCCHC6Q5VYS8 1495 aaKnown RBP5.53□□□□□ -1.52
PHC3-215ENST00000495893 PABPN1Q86U42 306 aaKnown RBP eCLIP5.52□□□□□ -1.53
PHC3-215ENST00000495893 SCRIBQ14160 1630 aa5.51□□□□□ -1.53
PHC3-215ENST00000495893 ERCC6Q03468 1493 aa5.5□□□□□ -1.53
PHC3-215ENST00000495893 CLSPNQ9HAW4 1339 aa5.5□□□□□ -1.53
PHC3-215ENST00000495893 HRCP23327 699 aa5.46□□□□□ -1.53
PHC3-215ENST00000495893 EIF5BO60841 1220 aaKnown RBP5.46□□□□□ -1.54
PHC3-215ENST00000495893 SMARCA2P51531 1590 aa5.44□□□□□ -1.54
PHC3-215ENST00000495893 CECR2Q9BXF3 1484 aa5.42□□□□□ -1.54
PHC3-215ENST00000495893 CDK11AQ9UQ88 783 aaPredicted RBP5.4□□□□□ -1.54
PHC3-215ENST00000495893 TNNT2P45379 298 aaPredicted RBP5.4□□□□□ -1.54
PHC3-215ENST00000495893 BAZ1BQ9UIG0 1483 aaKnown RBP5.39□□□□□ -1.55
PHC3-215ENST00000495893 ANP32BQ92688 251 aaKnown RBP5.39□□□□□ -1.55
PHC3-215ENST00000495893 PDS5BQ9NTI5 1447 aa5.38□□□□□ -1.55
PHC3-215ENST00000495893 BAZ1AQ9NRL2 1556 aaPredicted RBP5.37□□□□□ -1.55
PHC3-215ENST00000495893 TRIM26Q12899 539 aaPredicted RBP5.37□□□□□ -1.55
PHC3-215ENST00000495893 ANP32AP39687 249 aaKnown RBP5.36□□□□□ -1.55
PHC3-215ENST00000495893 NCLP19338 710 aaKnown RBP5.34□□□□□ -1.55
PHC3-215ENST00000495893 GTF3C3Q9Y5Q9 886 aa5.33□□□□□ -1.56
PHC3-215ENST00000495893 DIEXFQ68CQ4 756 aaKnown RBP5.31□□□□□ -1.56
PHC3-215ENST00000495893 TRIM44Q96DX7 344 aaPredicted RBP5.31□□□□□ -1.56
PHC3-215ENST00000495893 NPM1P06748 294 aaKnown RBP eCLIP5.31□□□□□ -1.56
PHC3-215ENST00000495893 CDK11BP21127 795 aaKnown RBP5.3□□□□□ -1.56
PHC3-215ENST00000495893 ABCC8Q09428 1581 aa5.27□□□□□ -1.57
PHC3-215ENST00000495893 POLR3GLQ9BT43 218 aa5.27□□□□□ -1.57
PHC3-215ENST00000495893 EIF4G1Q04637 1599 aaKnown RBP5.27□□□□□ -1.57
PHC3-215ENST00000495893 ACIN1Q9UKV3 1341 aaKnown RBP5.27□□□□□ -1.57
PHC3-215ENST00000495893 HMGXB3Q12766 1538 aa5.26□□□□□ -1.57
PHC3-215ENST00000495893 CUX2O14529 1486 aa5.26□□□□□ -1.57
PHC3-215ENST00000495893 ATP1B4Q9UN42 357 aaPredicted RBP5.26□□□□□ -1.57
PHC3-215ENST00000495893 FBLN2P98095 1184 aa5.25□□□□□ -1.57
PHC3-215ENST00000495893 SLC24A1O60721 1099 aa5.24□□□□□ -1.57
PHC3-215ENST00000495893 CC2D2AQ9P2K1 1620 aa5.24□□□□□ -1.57
PHC3-215ENST00000495893 ANP32EQ9BTT0 268 aa5.24□□□□□ -1.57
PHC3-215ENST00000495893 ZBTB47Q9UFB7 747 aaPredicted RBP5.22□□□□□ -1.57
PHC3-215ENST00000495893 CEP164Q9UPV0 1460 aa5.22□□□□□ -1.57
PHC3-215ENST00000495893 ERICH6BQ5W0A0 696 aa5.22□□□□□ -1.57
PHC3-215ENST00000495893 ZNF326Q5BKZ1 582 aaKnown RBP5.22□□□□□ -1.57
PHC3-215ENST00000495893 NCAPD3P42695 1498 aa5.22□□□□□ -1.57
PHC3-215ENST00000495893 BCL11AQ9H165 835 aa5.21□□□□□ -1.58
PHC3-215ENST00000495893 CHMP7Q8WUX9 453 aaPredicted RBP5.21□□□□□ -1.58
PHC3-215ENST00000495893 BCANQ96GW7 911 aa5.19□□□□□ -1.58
PHC3-215ENST00000495893 CADPSQ9ULU8 1353 aa5.18□□□□□ -1.58
PHC3-215ENST00000495893 SMARCA4P51532 1647 aa5.18□□□□□ -1.58
PHC3-215ENST00000495893 UPF2Q9HAU5 1272 aaKnown RBP5.18□□□□□ -1.58
PHC3-215ENST00000495893 MRC2Q9UBG0 1479 aa5.18□□□□□ -1.58
PHC3-215ENST00000495893 TRIM41Q8WV44 630 aa5.17□□□□□ -1.58
PHC3-215ENST00000495893 LAMC3Q9Y6N6 1575 aa5.17□□□□□ -1.58
PHC3-215ENST00000495893 PTMSP20962 102 aa5.17□□□□□ -1.58
PHC3-215ENST00000495893 ANP32CO43423 234 aa5.17□□□□□ -1.58
PHC3-215ENST00000495893 OSCARQ8IYS5 282 aa5.17□□□□□ -1.58
PHC3-215ENST00000495893 NEFMP07197 916 aa5.16□□□□□ -1.58
PHC3-215ENST00000495893 UBTFP17480 764 aaKnown RBP5.16□□□□□ -1.58
PHC3-215ENST00000495893 ESF1Q9H501 851 aaKnown RBP5.16□□□□□ -1.58
PHC3-215ENST00000495893 ATAD2BQ9ULI0 1458 aa5.16□□□□□ -1.58
PHC3-215ENST00000495893 HSP90AA1P07900 732 aaKnown RBP5.16□□□□□ -1.58
PHC3-215ENST00000495893 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.15□□□□□ -1.58
PHC3-215ENST00000495893 HNRNPUL2Q1KMD3 747 aaKnown RBP5.15□□□□□ -1.58
PHC3-215ENST00000495893 NBR1Q14596 966 aa5.15□□□□□ -1.58
PHC3-215ENST00000495893 DDRGK1Q96HY6 314 aa5.15□□□□□ -1.59
PHC3-215ENST00000495893 AEBP2Q6ZN18 517 aaPredicted RBP5.15□□□□□ -1.59
PHC3-215ENST00000495893 NAP1L5Q96NT1 182 aaPredicted RBP5.14□□□□□ -1.59
PHC3-215ENST00000495893 PPARGC1BQ86YN6 1023 aaKnown RBP5.14□□□□□ -1.59
PHC3-215ENST00000495893 NPM2Q86SE8 214 aaKnown RBP5.14□□□□□ -1.59
PHC3-215ENST00000495893 TOP2AP11388 1531 aaKnown RBP5.13□□□□□ -1.59
PHC3-215ENST00000495893 TRHP20396 242 aaPredicted RBP5.13□□□□□ -1.59
PHC3-215ENST00000495893 IFT140Q96RY7 1462 aa5.12□□□□□ -1.59
PHC3-215ENST00000495893 CNGB1Q14028 1251 aaPredicted RBP5.12□□□□□ -1.59
PHC3-215ENST00000495893 CALRP27797 417 aaKnown RBP5.11□□□□□ -1.59
PHC3-215ENST00000495893 CANXP27824 592 aaKnown RBP5.11□□□□□ -1.59
PHC3-215ENST00000495893 WRNQ14191 1432 aaPredicted RBP eCLIP5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms