RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 MYT1Q01538 1121 aa7.64□□□□□ -1.19
NEDD4-201ENST00000338963 PELP1Q8IZL8 1130 aaKnown RBP7.62□□□□□ -1.19
NEDD4-201ENST00000338963 TTBK1Q5TCY1 1321 aaPredicted RBP7.32□□□□□ -1.24
NEDD4-201ENST00000338963 ERICH6Q7L0X2 663 aa6.9□□□□□ -1.3
NEDD4-201ENST00000338963 HRCP23327 699 aa6.79□□□□□ -1.32
NEDD4-201ENST00000338963 CENPBP07199 599 aaPredicted RBP6.61□□□□□ -1.35
NEDD4-201ENST00000338963 ZEB1P37275 1124 aaPredicted RBP6.59□□□□□ -1.35
NEDD4-201ENST00000338963 SLC24A1O60721 1099 aa6.59□□□□□ -1.35
NEDD4-201ENST00000338963 APLP2Q06481 763 aa6.54□□□□□ -1.36
NEDD4-201ENST00000338963 PRKCSHP14314 528 aaPredicted RBP6.51□□□□□ -1.37
NEDD4-201ENST00000338963 BCL11AQ9H165 835 aa6.47□□□□□ -1.37
NEDD4-201ENST00000338963 SCAF1Q9H7N4 1312 aaKnown RBP6.45□□□□□ -1.38
NEDD4-201ENST00000338963 ACIN1Q9UKV3 1341 aaKnown RBP6.4□□□□□ -1.38
NEDD4-201ENST00000338963 DAXXQ9UER7 740 aaPredicted RBP6.4□□□□□ -1.38
NEDD4-201ENST00000338963 CLSPNQ9HAW4 1339 aa6.37□□□□□ -1.39
NEDD4-201ENST00000338963 MYT1LQ9UL68 1186 aa6.37□□□□□ -1.39
NEDD4-201ENST00000338963 ANP32EQ9BTT0 268 aa6.34□□□□□ -1.4
NEDD4-201ENST00000338963 PCGF6Q9BYE7 350 aa6.3□□□□□ -1.4
NEDD4-201ENST00000338963 FAM9AQ8IZU1 332 aaPredicted RBP6.28□□□□□ -1.4
NEDD4-201ENST00000338963 PPARGC1BQ86YN6 1023 aaKnown RBP6.26□□□□□ -1.41
NEDD4-201ENST00000338963 GTF3C3Q9Y5Q9 886 aa6.26□□□□□ -1.41
NEDD4-201ENST00000338963 EIF5BO60841 1220 aaKnown RBP6.24□□□□□ -1.41
NEDD4-201ENST00000338963 TRIM26Q12899 539 aaPredicted RBP6.22□□□□□ -1.41
NEDD4-201ENST00000338963 DCAF1Q9Y4B6 1507 aa6.21□□□□□ -1.42
NEDD4-201ENST00000338963 ERICH6BQ5W0A0 696 aa6.19□□□□□ -1.42
NEDD4-201ENST00000338963 NEUROD1Q13562 356 aa6.17□□□□□ -1.42
NEDD4-201ENST00000338963 CCER1Q8TC90 406 aaPredicted RBP6.16□□□□□ -1.42
NEDD4-201ENST00000338963 UBE2Q2Q8WVN8 375 aa6.13□□□□□ -1.43
NEDD4-201ENST00000338963 NISCHQ9Y2I1 1504 aa6.12□□□□□ -1.43
NEDD4-201ENST00000338963 RANGAP1P46060 587 aaPredicted RBP6.11□□□□□ -1.43
NEDD4-201ENST00000338963 GLIPR1L2Q4G1C9 344 aa6.09□□□□□ -1.43
NEDD4-201ENST00000338963 YTHDC1Q96MU7 727 aaKnown RBP6.07□□□□□ -1.44
NEDD4-201ENST00000338963 CCDC180Q9P1Z9 1646 aa6.06□□□□□ -1.44
NEDD4-201ENST00000338963 CSRNP3Q8WYN3 585 aa6.06□□□□□ -1.44
NEDD4-201ENST00000338963 DIEXFQ68CQ4 756 aaKnown RBP6.04□□□□□ -1.44
NEDD4-201ENST00000338963 NEFLP07196 543 aa6.02□□□□□ -1.45
NEDD4-201ENST00000338963 PKNOX2Q96KN3 472 aa5.98□□□□□ -1.45
NEDD4-201ENST00000338963 PODXL2Q9NZ53 605 aa5.96□□□□□ -1.46
NEDD4-201ENST00000338963 TSHZ2Q9NRE2 1034 aa5.95□□□□□ -1.46
NEDD4-201ENST00000338963 CHIC1Q5VXU3 224 aa5.94□□□□□ -1.46
NEDD4-201ENST00000338963 ARXQ96QS3 562 aa5.92□□□□□ -1.46
NEDD4-201ENST00000338963 RTL5Q5HYW3 569 aaPredicted RBP5.91□□□□□ -1.46
NEDD4-201ENST00000338963 ZNF316A6NFI3 1004 aaPredicted RBP5.91□□□□□ -1.46
NEDD4-201ENST00000338963 NCBP3Q53F19 620 aaKnown RBP5.89□□□□□ -1.47
NEDD4-201ENST00000338963 FANCIQ9NVI1 1328 aa5.89□□□□□ -1.47
NEDD4-201ENST00000338963 SUPT16HQ9Y5B9 1047 aaKnown RBP5.89□□□□□ -1.47
NEDD4-201ENST00000338963 ANO8Q9HCE9 1232 aaPredicted RBP5.88□□□□□ -1.47
NEDD4-201ENST00000338963 DEKP35659 375 aaKnown RBP5.87□□□□□ -1.47
NEDD4-201ENST00000338963 TRIM41Q8WV44 630 aa5.87□□□□□ -1.47
NEDD4-201ENST00000338963 RSPH6AQ9H0K4 717 aa5.86□□□□□ -1.47
NEDD4-201ENST00000338963 ZNF326Q5BKZ1 582 aaKnown RBP5.85□□□□□ -1.47
NEDD4-201ENST00000338963 SUPT5HO00267 1087 aaKnown RBP5.83□□□□□ -1.48
NEDD4-201ENST00000338963 MYO15BQ96JP2 1530 aa5.81□□□□□ -1.48
NEDD4-201ENST00000338963 RBM19Q9Y4C8 960 aaKnown RBP5.81□□□□□ -1.48
NEDD4-201ENST00000338963 EHMT2Q96KQ7 1210 aa5.8□□□□□ -1.48
NEDD4-201ENST00000338963 CDK11AQ9UQ88 783 aaPredicted RBP5.8□□□□□ -1.48
NEDD4-201ENST00000338963 SALL2Q9Y467 1007 aaPredicted RBP5.78□□□□□ -1.48
NEDD4-201ENST00000338963 NCLP19338 710 aaKnown RBP5.76□□□□□ -1.49
NEDD4-201ENST00000338963 PDE4CQ08493 712 aa5.76□□□□□ -1.49
NEDD4-201ENST00000338963 USP35Q9P2H5 1018 aa5.76□□□□□ -1.49
NEDD4-201ENST00000338963 PDIA4P13667 645 aaKnown RBP5.76□□□□□ -1.49
NEDD4-201ENST00000338963 PLEKHG5O94827 1062 aa5.74□□□□□ -1.49
NEDD4-201ENST00000338963 C11orf95C9JLR9 678 aaPredicted RBP5.73□□□□□ -1.49
NEDD4-201ENST00000338963 NOP58Q9Y2X3 529 aaKnown RBP5.72□□□□□ -1.49
NEDD4-201ENST00000338963 TAF7LQ5H9L4 462 aa5.72□□□□□ -1.49
NEDD4-201ENST00000338963 HOMEZQ8IX15 550 aa5.71□□□□□ -1.5
NEDD4-201ENST00000338963 MIER1Q8N108 512 aa5.71□□□□□ -1.5
NEDD4-201ENST00000338963 CCDC136Q96JN2 1154 aa5.71□□□□□ -1.5
NEDD4-201ENST00000338963 PPM1GO15355 546 aaPredicted RBP5.7□□□□□ -1.5
NEDD4-201ENST00000338963 ANP32AP39687 249 aaKnown RBP5.7□□□□□ -1.5
NEDD4-201ENST00000338963 DCAF8L2P0C7V8 631 aa5.69□□□□□ -1.5
NEDD4-201ENST00000338963 VSIG10Q8N0Z9 540 aa5.69□□□□□ -1.5
NEDD4-201ENST00000338963 RRP9O43818 475 aaKnown RBP5.68□□□□□ -1.5
NEDD4-201ENST00000338963 FKBP8Q14318 412 aa5.67□□□□□ -1.5
NEDD4-201ENST00000338963 FGD1P98174 961 aa5.67□□□□□ -1.5
NEDD4-201ENST00000338963 FAM43AQ8N2R8 423 aa5.67□□□□□ -1.5
NEDD4-201ENST00000338963 ZMYND15Q9H091 742 aa5.66□□□□□ -1.5
NEDD4-201ENST00000338963 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.66□□□□□ -1.5
NEDD4-201ENST00000338963 NEFMP07197 916 aa5.64□□□□□ -1.51
NEDD4-201ENST00000338963 ZBTB47Q9UFB7 747 aaPredicted RBP5.64□□□□□ -1.51
NEDD4-201ENST00000338963 ZBTB4Q9P1Z0 1013 aaPredicted RBP5.64□□□□□ -1.51
NEDD4-201ENST00000338963 HSP90AA1P07900 732 aaKnown RBP5.63□□□□□ -1.51
NEDD4-201ENST00000338963 HSP90AA2PQ14568 343 aaPredicted RBP5.63□□□□□ -1.51
NEDD4-201ENST00000338963 LOC105371045A0A1W2PR82 267 aa5.62□□□□□ -1.51
NEDD4-201ENST00000338963 MSH5O43196 834 aa5.62□□□□□ -1.51
NEDD4-201ENST00000338963 BCANQ96GW7 911 aa5.62□□□□□ -1.51
NEDD4-201ENST00000338963 BRD2P25440 801 aaKnown RBP5.61□□□□□ -1.51
NEDD4-201ENST00000338963 AAMPQ13685 434 aa5.61□□□□□ -1.51
NEDD4-201ENST00000338963 RBM10P98175 930 aaKnown RBP5.61□□□□□ -1.51
NEDD4-201ENST00000338963 WASHC2CQ9Y4E1 1318 aa5.6□□□□□ -1.51
NEDD4-201ENST00000338963 ANP32BQ92688 251 aaKnown RBP5.6□□□□□ -1.51
NEDD4-201ENST00000338963 CNGB1Q14028 1251 aaPredicted RBP5.6□□□□□ -1.51
NEDD4-201ENST00000338963 IPO9Q96P70 1041 aaKnown RBP5.59□□□□□ -1.51
NEDD4-201ENST00000338963 PPP4R2Q9NY27 417 aa5.59□□□□□ -1.51
NEDD4-201ENST00000338963 CALD1Q05682 793 aaKnown RBP5.59□□□□□ -1.51
NEDD4-201ENST00000338963 WASHC2AQ641Q2 1341 aa5.59□□□□□ -1.51
NEDD4-201ENST00000338963 TNNT2P45379 298 aaPredicted RBP5.58□□□□□ -1.52
NEDD4-201ENST00000338963 DDRGK1Q96HY6 314 aa5.58□□□□□ -1.52
NEDD4-201ENST00000338963 MAP7D2Q96T17 732 aa5.58□□□□□ -1.52
NEDD4-201ENST00000338963 NBR1Q14596 966 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms