Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL9A1P20849 AL359219.2-201ENST00000555184 348 ntBASIC6.8□□□□□ -1.32
COL9A1P20849 LINC01533-205ENST00000593056 607 ntTSL 3 BASIC6.8□□□□□ -1.32
COL9A1P20849 AC174048.1-201ENST00000603389 144 ntBASIC6.8□□□□□ -1.32
COL9A1P20849 AL158032.1-201ENST00000605401 106 ntBASIC6.8□□□□□ -1.32
COL9A1P20849 NBPF26-206ENST00000617913 2931 ntTSL 5 BASIC6.8□□□□□ -1.32
COL9A1P20849 FAM27E2-201ENST00000619668 403 ntBASIC6.8□□□□□ -1.32
COL9A1P20849 AL096816.1-201ENST00000623300 2920 ntBASIC6.8□□□□□ -1.32
COL9A1P20849 IYD-202ENST00000344419 8742 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL9A1P20849 ART4-201ENST00000228936 5129 ntAPPRIS P2 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL9A1P20849 BTN3A3-201ENST00000244519 3002 ntAPPRIS P4 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL9A1P20849 ZNF33B-201ENST00000359467 5958 ntAPPRIS P2 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL9A1P20849 KCTD6-201ENST00000355076 2425 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL9A1P20849 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC6.8□□□□□ -1.32
COL9A1P20849 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC6.8□□□□□ -1.32
COL9A1P20849 FASTKD1-204ENST00000453153 2967 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL9A1P20849 HTT-201ENST00000355072 13474 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL9A1P20849 LRIG3-202ENST00000379141 3667 ntTSL 1 (best) BASIC6.8□□□□□ -1.32
COL9A1P20849 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC6.8□□□□□ -1.32
COL9A1P20849 CASC19-246ENST00000641625 1606 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC6.79□□□□□ -1.32
COL9A1P20849 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 HSP90AA5P-201ENST00000438353 2192 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 CR1-203ENST00000367051 7469 ntTSL 5 BASIC6.79□□□□□ -1.32
COL9A1P20849 CR1-204ENST00000367052 7469 ntTSL 5 BASIC6.79□□□□□ -1.32
COL9A1P20849 CR1-205ENST00000367053 7469 ntTSL 5 BASIC6.79□□□□□ -1.32
COL9A1P20849 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 GARNL3-202ENST00000373387 3800 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 RACGAP1P-201ENST00000550663 1879 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 ADH7-201ENST00000209665 2289 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 ZNF283-201ENST00000324461 2297 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC6.79□□□□□ -1.32
COL9A1P20849 PSEN1-201ENST00000324501 6078 ntAPPRIS P4 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 STAG1-202ENST00000383202 6055 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 LINC02555-201ENST00000563933 1951 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 ATAD1-202ENST00000328142 2939 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 ARHGAP42P4-201ENST00000549782 2934 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 BEST3-212ENST00000553096 2929 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 CD109-201ENST00000287097 9130 ntAPPRIS P3 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 CD46-204ENST00000357714 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 AMPD3-209ENST00000529507 3156 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
COL9A1P20849 Y_RNA.27-201ENST00000362540 103 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 RNA5SP132-201ENST00000364725 118 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 Y_RNA.458-201ENST00000384240 102 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 RNU6-417P-201ENST00000384712 107 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 MIR130B-202ENST00000385018 82 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 AL645927.1-201ENST00000396783 406 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 Y_RNA.592-201ENST00000410274 109 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 PRUNEP1-201ENST00000425846 705 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 AC092423.1-201ENST00000430165 186 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 HMGB3P24-201ENST00000433260 622 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 AC087190.1-201ENST00000484462 480 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 AC107032.1-201ENST00000485945 480 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 RPS4XP23-201ENST00000487801 237 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 GM2AP2-201ENST00000491764 562 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 RPS17P5-201ENST00000498293 408 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 AC005823.2-201ENST00000505978 650 ntTSL 3 BASIC6.79□□□□□ -1.32
COL9A1P20849 LINC01386-201ENST00000506196 440 ntTSL 3 BASIC6.79□□□□□ -1.32
COL9A1P20849 AL390198.2-201ENST00000510553 222 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 AC008958.1-201ENST00000511047 682 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 RN7SKP238-201ENST00000516483 249 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 TRAPPC2P2-201ENST00000517589 409 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 AC091144.1-201ENST00000519573 138 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC6.79□□□□□ -1.32
COL9A1P20849 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC6.79□□□□□ -1.32
COL9A1P20849 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC6.79□□□□□ -1.32
COL9A1P20849 MIR4504-201ENST00000577413 92 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 MIR3144-201ENST00000579460 79 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 MIR4300-201ENST00000581016 96 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 AL160281.1-201ENST00000605307 311 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC6.79□□□□□ -1.32
COL9A1P20849 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC6.79□□□□□ -1.32
COL9A1P20849 EIF2S3-201ENST00000253039 2858 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 AC243772.3-201ENST00000617878 1537 ntTSL 5 BASIC6.79□□□□□ -1.32
COL9A1P20849 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 METTL8-217ENST00000612742 8132 ntAPPRIS P1 TSL 2 BASIC6.79□□□□□ -1.32
COL9A1P20849 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 DNM1L-202ENST00000358214 3229 ntTSL 5 BASIC6.79□□□□□ -1.32
COL9A1P20849 CD46-209ENST00000367047 3089 ntTSL 5 BASIC6.79□□□□□ -1.32
COL9A1P20849 PAICS-208ENST00000514888 3340 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 PLEKHM3-202ENST00000427836 9807 ntAPPRIS P1 TSL 5 BASIC6.79□□□□□ -1.32
COL9A1P20849 AL391684.1-202ENST00000641293 1636 ntBASIC6.79□□□□□ -1.32
COL9A1P20849 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC6.79□□□□□ -1.32
COL9A1P20849 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 ADAM3A-207ENST00000490268 2627 ntTSL 1 (best) BASIC6.79□□□□□ -1.32
COL9A1P20849 BLOC1S2-205ENST00000614731 2634 ntTSL 2 BASIC6.79□□□□□ -1.32
COL9A1P20849 LINC02008-201ENST00000470263 1951 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL9A1P20849 ADH1B-201ENST00000305046 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL9A1P20849 RBM43-201ENST00000331426 4192 ntAPPRIS P2 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL9A1P20849 AL139805.2-201ENST00000455305 2433 ntBASIC6.78□□□□□ -1.32
COL9A1P20849 CEP44-206ENST00000503780 4534 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL9A1P20849 AC009643.2-201ENST00000603543 1448 ntBASIC6.78□□□□□ -1.32
COL9A1P20849 ENTPD1-AS1-212ENST00000458228 3274 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL9A1P20849 LRRTM3-201ENST00000361320 4358 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL9A1P20849 SETDB1-205ENST00000368969 4370 ntAPPRIS P3 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL9A1P20849 IL16-204ENST00000394660 9616 ntAPPRIS ALT2 TSL 2 BASIC6.78□□□□□ -1.32
COL9A1P20849 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL9A1P20849 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
Retrieved 100 of 98,524 protein–RNA pairs in 100.5 ms