Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC10.26□□□□□ -0.77
MSH5O43196 ZCCHC2-204ENST00000586834 4765 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
MSH5O43196 ANK2-215ENST00000509550 3638 ntTSL 2 BASIC10.26□□□□□ -0.77
MSH5O43196 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC10.26□□□□□ -0.77
MSH5O43196 PTPRB-208ENST00000550358 6583 ntTSL 2 BASIC10.26□□□□□ -0.77
MSH5O43196 AC096582.3-201ENST00000636578 3716 ntAPPRIS P1 TSL 5 BASIC10.26□□□□□ -0.77
MSH5O43196 FAT1-212ENST00000614102 14758 ntAPPRIS ALT1 TSL 5 BASIC10.26□□□□□ -0.77
MSH5O43196 TAF1-203ENST00000373790 7629 ntAPPRIS ALT2 TSL 1 (best) BASIC10.26□□□□□ -0.77
MSH5O43196 SNORA72.2-201ENST00000365028 127 ntBASIC10.26□□□□□ -0.77
MSH5O43196 GAGE12E-201ENST00000381698 520 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
MSH5O43196 RNU6-1336P-201ENST00000383886 109 ntBASIC10.26□□□□□ -0.77
MSH5O43196 RN7SKP261-201ENST00000410948 278 ntBASIC10.26□□□□□ -0.77
MSH5O43196 AC099677.1-201ENST00000420575 175 ntBASIC10.26□□□□□ -0.77
MSH5O43196 RPSAP1-201ENST00000421328 880 ntBASIC10.26□□□□□ -0.77
MSH5O43196 AC096638.1-201ENST00000444678 216 ntBASIC10.26□□□□□ -0.77
MSH5O43196 AC073587.1-201ENST00000447093 876 ntBASIC10.26□□□□□ -0.77
MSH5O43196 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC10.26□□□□□ -0.77
MSH5O43196 RNU2-13P-201ENST00000515909 113 ntBASIC10.26□□□□□ -0.77
MSH5O43196 AP000873.2-207ENST00000529607 452 ntTSL 3 BASIC10.26□□□□□ -0.77
MSH5O43196 LINC01397-201ENST00000554808 579 ntTSL 4 BASIC10.26□□□□□ -0.77
MSH5O43196 AC091178.1-204ENST00000577328 366 ntTSL 4 BASIC10.26□□□□□ -0.77
MSH5O43196 MIR548AC-201ENST00000585049 88 ntBASIC10.26□□□□□ -0.77
MSH5O43196 AC010761.6-201ENST00000587898 197 ntTSL 3 BASIC10.26□□□□□ -0.77
MSH5O43196 AC245088.3-201ENST00000634383 424 ntAPPRIS P1 BASIC10.26□□□□□ -0.77
MSH5O43196 ODF2-209ENST00000434106 3890 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
MSH5O43196 LAMB4-202ENST00000388781 5858 ntAPPRIS P1 TSL 1 (best) BASIC10.26□□□□□ -0.77
MSH5O43196 AC020633.1-201ENST00000468439 2247 ntBASIC10.26□□□□□ -0.77
MSH5O43196 NBR1-201ENST00000341165 4656 ntAPPRIS P3 TSL 1 (best) BASIC10.26□□□□□ -0.77
MSH5O43196 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC10.26□□□□□ -0.77
MSH5O43196 TNFRSF19-204ENST00000403372 4277 ntAPPRIS ALT2 TSL 2 BASIC10.26□□□□□ -0.77
MSH5O43196 NUMB-232ENST00000560335 1586 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
MSH5O43196 ANGEL2-201ENST00000360506 4323 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
MSH5O43196 AL357556.1-201ENST00000421884 1388 ntBASIC10.26□□□□□ -0.77
MSH5O43196 AC005614.1-201ENST00000598952 3653 ntBASIC10.26□□□□□ -0.77
MSH5O43196 SHC4-202ENST00000396535 2799 ntTSL 1 (best) BASIC10.26□□□□□ -0.77
MSH5O43196 AC116366.1-201ENST00000443093 3730 ntTSL 5 BASIC10.25□□□□□ -0.77
MSH5O43196 OLFM3-202ENST00000370103 3255 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
MSH5O43196 TTC28-208ENST00000612946 11274 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
MSH5O43196 AC026398.1-201ENST00000413683 3126 ntAPPRIS P1 TSL 2 BASIC10.25□□□□□ -0.77
MSH5O43196 FAR2P1-201ENST00000325390 3679 ntTSL 5 BASIC10.25□□□□□ -0.77
MSH5O43196 AC016251.1-201ENST00000624299 4198 ntBASIC10.25□□□□□ -0.77
MSH5O43196 ZNF474-201ENST00000296600 1964 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
MSH5O43196 ARMC8-210ENST00000469044 4790 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.77
MSH5O43196 CUBNP3-201ENST00000457461 1784 ntBASIC10.25□□□□□ -0.77
MSH5O43196 SNX18P3-202ENST00000565670 1750 ntBASIC10.25□□□□□ -0.77
MSH5O43196 AC092268.1-201ENST00000342691 405 ntBASIC10.25□□□□□ -0.77
MSH5O43196 U3.9-201ENST00000363823 204 ntBASIC10.25□□□□□ -0.77
MSH5O43196 TRAV12-1-201ENST00000390433 340 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
MSH5O43196 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC10.25□□□□□ -0.77
MSH5O43196 AC008171.1-201ENST00000395058 200 ntBASIC10.25□□□□□ -0.77
MSH5O43196 RNU2-32P-201ENST00000411193 191 ntBASIC10.25□□□□□ -0.77
MSH5O43196 RNU6-1001P-201ENST00000411265 100 ntBASIC10.25□□□□□ -0.77
MSH5O43196 FTH1P10-202ENST00000430907 550 ntBASIC10.25□□□□□ -0.77
MSH5O43196 AC104698.1-201ENST00000435671 276 ntBASIC10.25□□□□□ -0.77
MSH5O43196 SLAMF6P1-201ENST00000451067 602 ntBASIC10.25□□□□□ -0.77
MSH5O43196 CHIAP1-201ENST00000456220 995 ntBASIC10.25□□□□□ -0.77
MSH5O43196 TUBBP11-201ENST00000472255 252 ntBASIC10.25□□□□□ -0.77
MSH5O43196 MRPS5P3-201ENST00000515577 166 ntBASIC10.25□□□□□ -0.77
MSH5O43196 RNU6-352P-201ENST00000516908 107 ntBASIC10.25□□□□□ -0.77
MSH5O43196 MAL2-206ENST00000522187 547 ntTSL 4 BASIC10.25□□□□□ -0.77
MSH5O43196 AC137627.1-201ENST00000545761 289 ntBASIC10.25□□□□□ -0.77
MSH5O43196 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC10.25□□□□□ -0.77
MSH5O43196 AC021231.3-201ENST00000558497 370 ntBASIC10.25□□□□□ -0.77
MSH5O43196 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC10.25□□□□□ -0.77
MSH5O43196 BNIP3P5-201ENST00000562290 498 ntBASIC10.25□□□□□ -0.77
MSH5O43196 AC024614.1-201ENST00000577546 307 ntBASIC10.25□□□□□ -0.77
MSH5O43196 LINC01198-208ENST00000599175 560 ntTSL 5 BASIC10.25□□□□□ -0.77
MSH5O43196 AL358335.3-201ENST00000604678 327 ntBASIC10.25□□□□□ -0.77
MSH5O43196 AC005296.1-201ENST00000616145 209 ntBASIC10.25□□□□□ -0.77
MSH5O43196 AC026336.5-201ENST00000624455 738 ntBASIC10.25□□□□□ -0.77
MSH5O43196 ZNF182-202ENST00000396965 3586 ntAPPRIS P4 TSL 2 BASIC10.25□□□□□ -0.77
MSH5O43196 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
MSH5O43196 CDH6-201ENST00000265071 8476 ntAPPRIS P1 TSL 2 BASIC10.25□□□□□ -0.77
MSH5O43196 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC10.25□□□□□ -0.77
MSH5O43196 LRRC8B-203ENST00000439853 7474 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
MSH5O43196 B4GALNT2-202ENST00000393354 8657 ntAPPRIS ALT2 TSL 1 (best) BASIC10.25□□□□□ -0.77
MSH5O43196 CTAGE11P-201ENST00000451540 2353 ntBASIC10.25□□□□□ -0.77
MSH5O43196 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC10.25□□□□□ -0.77
MSH5O43196 USP47-203ENST00000399455 7396 ntAPPRIS ALT2 TSL 5 BASIC10.25□□□□□ -0.77
MSH5O43196 GABRB3-225ENST00000638099 2752 ntTSL 5 BASIC10.25□□□□□ -0.77
MSH5O43196 DNAI1-201ENST00000242317 2504 ntAPPRIS P3 TSL 1 (best) BASIC10.25□□□□□ -0.77
MSH5O43196 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC10.25□□□□□ -0.77
MSH5O43196 PIGN-210ENST00000588571 1960 ntTSL 5 BASIC10.25□□□□□ -0.77
MSH5O43196 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC10.25□□□□□ -0.77
MSH5O43196 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC10.24□□□□□ -0.77
MSH5O43196 TMCC3-203ENST00000551457 4361 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 FOXJ3-205ENST00000372573 5309 ntAPPRIS P3 TSL 2 BASIC10.24□□□□□ -0.77
MSH5O43196 LINC01504-201ENST00000436054 2078 ntTSL 2 BASIC10.24□□□□□ -0.77
MSH5O43196 PRUNE2-201ENST00000223609 2697 ntTSL 2 BASIC10.24□□□□□ -0.77
MSH5O43196 CCR6-202ENST00000349984 2980 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 CCNT2-202ENST00000295238 4491 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 AKT3-203ENST00000366539 5127 ntAPPRIS P1 TSL 5 BASIC10.24□□□□□ -0.77
MSH5O43196 APOL3-203ENST00000397287 3626 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 PLD5-203ENST00000427495 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC10.24□□□□□ -0.77
MSH5O43196 KPNA1-201ENST00000344337 6830 ntAPPRIS P1 TSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC10.24□□□□□ -0.77
MSH5O43196 DAPL1-201ENST00000309950 552 ntTSL 1 (best) BASIC10.24□□□□□ -0.77
MSH5O43196 RNU6-1249P-201ENST00000363237 111 ntBASIC10.24□□□□□ -0.77
Retrieved 100 of 98,524 protein–RNA pairs in 336.1 ms