RNA–Protein interactions for RNA: ENST00000363237.1

RNU6-1249P-201, Transcript of RNA, U6 small nuclear 1249, pseudogene, humanhuman

BASIC

Gene RNU6-1249P, Length 111 nt, Biotype snRNA, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-1249P-201ENST00000363237 AEBP2Q6ZN18 517 aaPredicted RBP12.88□□□□□ -0.35
RNU6-1249P-201ENST00000363237 CHIC1Q5VXU3 224 aa12.33□□□□□ -0.44
RNU6-1249P-201ENST00000363237 POTEDQ86YR6 584 aa11.73□□□□□ -0.53
RNU6-1249P-201ENST00000363237 SENP3Q9H4L4 574 aaPredicted RBP11.16□□□□□ -0.62
RNU6-1249P-201ENST00000363237 PHF23Q9BUL5 403 aaPredicted RBP10.88□□□□□ -0.67
RNU6-1249P-201ENST00000363237 FOXD1Q16676 465 aa10.52□□□□□ -0.73
RNU6-1249P-201ENST00000363237 PLPPR3Q6T4P5 718 aa10.31□□□□□ -0.76
RNU6-1249P-201ENST00000363237 MSH5O43196 834 aa10.24□□□□□ -0.77
RNU6-1249P-201ENST00000363237 EHMT2Q96KQ7 1210 aa9.67□□□□□ -0.86
RNU6-1249P-201ENST00000363237 KCNA4P22459 653 aa9.59□□□□□ -0.87
RNU6-1249P-201ENST00000363237 ADRA2BP18089 450 aa9.56□□□□□ -0.88
RNU6-1249P-201ENST00000363237 PIAS4Q8N2W9 510 aaPredicted RBP9.54□□□□□ -0.88
RNU6-1249P-201ENST00000363237 PPP6R1Q9UPN7 881 aa9.39□□□□□ -0.91
RNU6-1249P-201ENST00000363237 CACNB1Q02641 598 aaPredicted RBP9.38□□□□□ -0.91
RNU6-1249P-201ENST00000363237 CSRNP3Q8WYN3 585 aa9.31□□□□□ -0.92
RNU6-1249P-201ENST00000363237 SLC4A1APQ9BWU0 796 aaKnown RBP9.27□□□□□ -0.93
RNU6-1249P-201ENST00000363237 PPP4R3CPQ6ZMV5 832 aa9.14□□□□□ -0.95
RNU6-1249P-201ENST00000363237 NCBP3Q53F19 620 aaKnown RBP9.12□□□□□ -0.95
RNU6-1249P-201ENST00000363237 POTEHQ6S545 545 aa8.97□□□□□ -0.97
RNU6-1249P-201ENST00000363237 NPM3O75607 178 aaKnown RBP8.94□□□□□ -0.98
RNU6-1249P-201ENST00000363237 SLC24A1O60721 1099 aa8.88□□□□□ -0.99
RNU6-1249P-201ENST00000363237 ZBTB22O15209 634 aa8.81□□□□□ -1
RNU6-1249P-201ENST00000363237 CNKSR2Q8WXI2 1034 aa8.78□□□□□ -1
RNU6-1249P-201ENST00000363237 AMER1Q5JTC6 1135 aaPredicted RBP8.76□□□□□ -1.01
RNU6-1249P-201ENST00000363237 SCAF1Q9H7N4 1312 aaKnown RBP8.7□□□□□ -1.02
RNU6-1249P-201ENST00000363237 RTN4Q9NQC3 1192 aaKnown RBP8.69□□□□□ -1.02
RNU6-1249P-201ENST00000363237 FOXD4L1Q9NU39 408 aa8.69□□□□□ -1.02
RNU6-1249P-201ENST00000363237 DMRT2Q9Y5R5 561 aa8.69□□□□□ -1.02
RNU6-1249P-201ENST00000363237 RNF39Q9H2S5 420 aa8.65□□□□□ -1.02
RNU6-1249P-201ENST00000363237 DNAJC5BQ9UF47 199 aa8.65□□□□□ -1.02
RNU6-1249P-201ENST00000363237 MAPK8IP2Q13387 824 aaPredicted RBP8.52□□□□□ -1.05
RNU6-1249P-201ENST00000363237 C1QBPQ07021 282 aaKnown RBP8.48□□□□□ -1.05
RNU6-1249P-201ENST00000363237 RNF216Q9NWF9 866 aaPredicted RBP8.45□□□□□ -1.06
RNU6-1249P-201ENST00000363237 FKBP8Q14318 412 aa8.38□□□□□ -1.07
RNU6-1249P-201ENST00000363237 ATXN8OSP0DMR3 200 aa8.37□□□□□ -1.07
RNU6-1249P-201ENST00000363237 DCAF8L1A6NGE4 600 aa8.29□□□□□ -1.08
RNU6-1249P-201ENST00000363237 MYCNP04198 464 aaPredicted RBP8.27□□□□□ -1.09
RNU6-1249P-201ENST00000363237 SLC4A2P04920 1241 aa8.27□□□□□ -1.09
RNU6-1249P-201ENST00000363237 HOXD11P31277 338 aaPredicted RBP8.24□□□□□ -1.09
RNU6-1249P-201ENST00000363237 PLCB2Q00722 1185 aa8.03□□□□□ -1.12
RNU6-1249P-201ENST00000363237 FBXO3Q9UK99 471 aa7.98□□□□□ -1.13
RNU6-1249P-201ENST00000363237 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.96□□□□□ -1.14
RNU6-1249P-201ENST00000363237 HNRNPUL2Q1KMD3 747 aaKnown RBP7.96□□□□□ -1.14
RNU6-1249P-201ENST00000363237 SP7Q8TDD2 431 aaPredicted RBP7.94□□□□□ -1.14
RNU6-1249P-201ENST00000363237 ATF5Q9Y2D1 282 aaPredicted RBP7.94□□□□□ -1.14
RNU6-1249P-201ENST00000363237 SAMD1Q6SPF0 538 aaPredicted RBP7.93□□□□□ -1.14
RNU6-1249P-201ENST00000363237 BCANQ96GW7 911 aa7.92□□□□□ -1.14
RNU6-1249P-201ENST00000363237 HAP1P54257 671 aaPredicted RBP7.9□□□□□ -1.14
RNU6-1249P-201ENST00000363237 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.85□□□□□ -1.15
RNU6-1249P-201ENST00000363237 VSIG10Q8N0Z9 540 aa7.84□□□□□ -1.15
RNU6-1249P-201ENST00000363237 SPDYE4A6NLX3 237 aa7.8□□□□□ -1.16
RNU6-1249P-201ENST00000363237 DCAF8L2P0C7V8 631 aa7.8□□□□□ -1.16
RNU6-1249P-201ENST00000363237 TAOK2Q9UL54 1235 aa7.8□□□□□ -1.16
RNU6-1249P-201ENST00000363237 VASPP50552 380 aaPredicted RBP7.79□□□□□ -1.16
RNU6-1249P-201ENST00000363237 PRKCSHP14314 528 aaPredicted RBP7.78□□□□□ -1.16
RNU6-1249P-201ENST00000363237 ZNF219Q9P2Y4 722 aaPredicted RBP7.78□□□□□ -1.16
RNU6-1249P-201ENST00000363237 PLSCR2Q9NRY7 297 aa7.77□□□□□ -1.17
RNU6-1249P-201ENST00000363237 U3KPZ7 1027 aaPredicted RBP7.77□□□□□ -1.17
RNU6-1249P-201ENST00000363237 PROM2Q8N271 834 aa7.76□□□□□ -1.17
RNU6-1249P-201ENST00000363237 DSG3P32926 999 aa7.75□□□□□ -1.17
RNU6-1249P-201ENST00000363237 APLP2Q06481 763 aa7.74□□□□□ -1.17
RNU6-1249P-201ENST00000363237 IFNLR1Q8IU57 520 aaPredicted RBP7.73□□□□□ -1.17
RNU6-1249P-201ENST00000363237 PKD2Q13563 968 aa7.7□□□□□ -1.18
RNU6-1249P-201ENST00000363237 ZBTB4Q9P1Z0 1013 aaPredicted RBP7.7□□□□□ -1.18
RNU6-1249P-201ENST00000363237 BBXQ8WY36 941 aaPredicted RBP7.67□□□□□ -1.18
RNU6-1249P-201ENST00000363237 TPRNQ4KMQ1 711 aa7.66□□□□□ -1.18
RNU6-1249P-201ENST00000363237 CHRDL2Q6WN34 429 aa7.65□□□□□ -1.18
RNU6-1249P-201ENST00000363237 FBLN2P98095 1184 aa7.64□□□□□ -1.19
RNU6-1249P-201ENST00000363237 MKRN4PQ13434 485 aaPredicted RBP7.64□□□□□ -1.19
RNU6-1249P-201ENST00000363237 KDM2AQ9Y2K7 1162 aa7.62□□□□□ -1.19
RNU6-1249P-201ENST00000363237 PAXIP1Q6ZW49 1069 aaPredicted RBP7.6□□□□□ -1.19
RNU6-1249P-201ENST00000363237 CFAP44Q96MT7 982 aa7.57□□□□□ -1.2
RNU6-1249P-201ENST00000363237 ECM2O94769 699 aaPredicted RBP7.56□□□□□ -1.2
RNU6-1249P-201ENST00000363237 SPOCK2Q92563 424 aa7.56□□□□□ -1.2
RNU6-1249P-201ENST00000363237 KLHL34Q8N239 644 aa7.54□□□□□ -1.2
RNU6-1249P-201ENST00000363237 NPM1P06748 294 aaKnown RBP eCLIP7.53□□□□□ -1.2
RNU6-1249P-201ENST00000363237 SPRYD3Q8NCJ5 442 aa7.53□□□□□ -1.2
RNU6-1249P-201ENST00000363237 CAPN15O75808 1086 aa7.5□□□□□ -1.21
RNU6-1249P-201ENST00000363237 SPINK5Q9NQ38 1064 aaPredicted RBP7.48□□□□□ -1.21
RNU6-1249P-201ENST00000363237 POLA2Q14181 598 aa7.46□□□□□ -1.22
RNU6-1249P-201ENST00000363237 TSHZ2Q9NRE2 1034 aa7.46□□□□□ -1.22
RNU6-1249P-201ENST00000363237 STAG3Q9UJ98 1225 aa7.46□□□□□ -1.22
RNU6-1249P-201ENST00000363237 RGL2O15211 777 aa7.44□□□□□ -1.22
RNU6-1249P-201ENST00000363237 NBR1Q14596 966 aa7.44□□□□□ -1.22
RNU6-1249P-201ENST00000363237 TRHP20396 242 aaPredicted RBP7.43□□□□□ -1.22
RNU6-1249P-201ENST00000363237 LHX8Q68G74 356 aa7.43□□□□□ -1.22
RNU6-1249P-201ENST00000363237 ZBTB12Q9Y330 459 aaPredicted RBP7.43□□□□□ -1.22
RNU6-1249P-201ENST00000363237 ERICH6Q7L0X2 663 aa7.42□□□□□ -1.22
RNU6-1249P-201ENST00000363237 RBM42Q9BTD8 480 aaKnown RBP7.42□□□□□ -1.22
RNU6-1249P-201ENST00000363237 DNAJC5Q9H3Z4 198 aa7.41□□□□□ -1.22
RNU6-1249P-201ENST00000363237 PLCD3Q8N3E9 789 aa7.4□□□□□ -1.22
RNU6-1249P-201ENST00000363237 HAX1O00165 279 aa7.38□□□□□ -1.23
RNU6-1249P-201ENST00000363237 CHGAP10645 457 aaKnown RBP7.38□□□□□ -1.23
RNU6-1249P-201ENST00000363237 TIMELESSQ9UNS1 1208 aa7.37□□□□□ -1.23
RNU6-1249P-201ENST00000363237 GTF3C3Q9Y5Q9 886 aa7.36□□□□□ -1.23
RNU6-1249P-201ENST00000363237 TULP1O00294 542 aaPredicted RBP7.35□□□□□ -1.23
RNU6-1249P-201ENST00000363237 MIER1Q8N108 512 aa7.34□□□□□ -1.23
RNU6-1249P-201ENST00000363237 TRIM41Q8WV44 630 aa7.34□□□□□ -1.23
RNU6-1249P-201ENST00000363237 ARXQ96QS3 562 aa7.34□□□□□ -1.23
RNU6-1249P-201ENST00000363237 ZNF692Q9BU19 519 aaPredicted RBP7.32□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms