Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 AC124283.5-201ENST00000624661 1809 ntBASIC16.8■□□□□ 0.28
NKX3-1Q99801 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
NKX3-1Q99801 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NKX3-1Q99801 AR-207ENST00000612010 3896 ntTSL 5 BASIC16.79■□□□□ 0.28
NKX3-1Q99801 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
NKX3-1Q99801 SMTN-204ENST00000404574 1735 ntTSL 2 BASIC16.79■□□□□ 0.28
NKX3-1Q99801 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
NKX3-1Q99801 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
NKX3-1Q99801 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NKX3-1Q99801 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.79■□□□□ 0.28
NKX3-1Q99801 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NKX3-1Q99801 DPAGT1-203ENST00000409993 3274 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
NKX3-1Q99801 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
NKX3-1Q99801 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
NKX3-1Q99801 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
NKX3-1Q99801 AL355802.2-201ENST00000402069 882 ntBASIC16.79■□□□□ 0.28
NKX3-1Q99801 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
NKX3-1Q99801 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC16.79■□□□□ 0.28
NKX3-1Q99801 AL109923.1-201ENST00000618799 583 ntBASIC16.79■□□□□ 0.28
NKX3-1Q99801 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NKX3-1Q99801 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
NKX3-1Q99801 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
NKX3-1Q99801 ATF5-201ENST00000423777 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NKX3-1Q99801 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC16.79■□□□□ 0.28
NKX3-1Q99801 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
NKX3-1Q99801 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC16.78■□□□□ 0.28
NKX3-1Q99801 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
NKX3-1Q99801 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.78■□□□□ 0.28
NKX3-1Q99801 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 GPX1P1-201ENST00000388829 606 ntBASIC16.78■□□□□ 0.28
NKX3-1Q99801 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC16.78■□□□□ 0.28
NKX3-1Q99801 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 OR10C1-204ENST00000622521 1039 ntBASIC16.78■□□□□ 0.28
NKX3-1Q99801 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.78■□□□□ 0.28
NKX3-1Q99801 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 IRF3-221ENST00000598808 1468 ntTSL 5 BASIC16.78■□□□□ 0.28
NKX3-1Q99801 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC16.78■□□□□ 0.28
NKX3-1Q99801 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC16.78■□□□□ 0.28
NKX3-1Q99801 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
NKX3-1Q99801 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC16.78■□□□□ 0.28
NKX3-1Q99801 ZNF274-203ENST00000424679 2539 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
NKX3-1Q99801 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC16.77■□□□□ 0.28
NKX3-1Q99801 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC16.77■□□□□ 0.28
NKX3-1Q99801 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
NKX3-1Q99801 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC16.77■□□□□ 0.28
NKX3-1Q99801 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
NKX3-1Q99801 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NKX3-1Q99801 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NKX3-1Q99801 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NKX3-1Q99801 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NKX3-1Q99801 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
NKX3-1Q99801 LSM12P1-201ENST00000411836 588 ntBASIC16.77■□□□□ 0.28
NKX3-1Q99801 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NKX3-1Q99801 ISCU-212ENST00000547005 795 ntTSL 3 BASIC16.77■□□□□ 0.28
NKX3-1Q99801 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC16.77■□□□□ 0.28
NKX3-1Q99801 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC16.77■□□□□ 0.28
NKX3-1Q99801 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
NKX3-1Q99801 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NKX3-1Q99801 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NKX3-1Q99801 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
NKX3-1Q99801 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NKX3-1Q99801 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
NKX3-1Q99801 IGFBP4-201ENST00000269593 2200 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NKX3-1Q99801 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC16.77■□□□□ 0.27
NKX3-1Q99801 ATP1B1-202ENST00000367816 2608 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
NKX3-1Q99801 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.77■□□□□ 0.27
NKX3-1Q99801 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.77■□□□□ 0.27
NKX3-1Q99801 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
NKX3-1Q99801 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.77■□□□□ 0.27
NKX3-1Q99801 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.77■□□□□ 0.27
NKX3-1Q99801 AC116351.2-201ENST00000606540 1585 ntBASIC16.77■□□□□ 0.27
NKX3-1Q99801 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC16.76■□□□□ 0.27
NKX3-1Q99801 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 MAF1-201ENST00000322428 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
NKX3-1Q99801 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
NKX3-1Q99801 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
NKX3-1Q99801 MAP2K4P1-201ENST00000438453 1195 ntBASIC16.76■□□□□ 0.27
NKX3-1Q99801 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC16.76■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 60.5 ms