Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 PRSS3-201ENST00000342836 1144 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
PTCHD1Q96NR3 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 AC026271.3-201ENST00000571884 352 ntBASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 TREX1-205ENST00000625293 1783 ntBASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 KRT16-201ENST00000301653 1644 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
PTCHD1Q96NR3 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 AL355075.4-201ENST00000554988 638 ntBASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 REXO1L10P-201ENST00000615707 1290 ntBASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 REXO1L12P-201ENST00000622156 912 ntBASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
PTCHD1Q96NR3 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PTCHD1Q96NR3 THTPA-202ENST00000404535 1779 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
PTCHD1Q96NR3 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
PTCHD1Q96NR3 FSCN1P1-201ENST00000568912 1481 ntBASIC18.14■□□□□ 0.5
PTCHD1Q96NR3 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
PTCHD1Q96NR3 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 AC116562.2-201ENST00000507042 360 ntBASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 MIR6786-201ENST00000616843 113 ntBASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 ZNF815P-204ENST00000434898 1737 ntBASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
PTCHD1Q96NR3 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 AC008105.1-201ENST00000587534 2003 ntTSL 2 BASIC18.13■□□□□ 0.49
PTCHD1Q96NR3 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC18.13■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms