Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC19.76■□□□□ 0.75
SKA1Q96BD8 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC19.76■□□□□ 0.75
SKA1Q96BD8 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SKA1Q96BD8 AP005263.1-201ENST00000579126 914 ntTSL 2 BASIC19.76■□□□□ 0.75
SKA1Q96BD8 AC097493.4-201ENST00000641197 219 ntBASIC19.76■□□□□ 0.75
SKA1Q96BD8 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SKA1Q96BD8 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
SKA1Q96BD8 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SKA1Q96BD8 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SKA1Q96BD8 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC19.76■□□□□ 0.75
SKA1Q96BD8 KRT8P20-201ENST00000423953 1409 ntBASIC19.76■□□□□ 0.75
SKA1Q96BD8 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
SKA1Q96BD8 MPZL1-201ENST00000359523 5010 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SKA1Q96BD8 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SKA1Q96BD8 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA1Q96BD8 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA1Q96BD8 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC19.75■□□□□ 0.75
SKA1Q96BD8 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA1Q96BD8 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC19.75■□□□□ 0.75
SKA1Q96BD8 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC19.75■□□□□ 0.75
SKA1Q96BD8 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC19.75■□□□□ 0.75
SKA1Q96BD8 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC19.75■□□□□ 0.75
SKA1Q96BD8 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SKA1Q96BD8 AC010331.1-201ENST00000611423 582 ntBASIC19.75■□□□□ 0.75
SKA1Q96BD8 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC19.75■□□□□ 0.75
SKA1Q96BD8 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA1Q96BD8 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA1Q96BD8 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SKA1Q96BD8 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA1Q96BD8 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA1Q96BD8 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA1Q96BD8 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SKA1Q96BD8 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.75■□□□□ 0.75
SKA1Q96BD8 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
SKA1Q96BD8 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SKA1Q96BD8 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SKA1Q96BD8 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SKA1Q96BD8 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.74■□□□□ 0.75
SKA1Q96BD8 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SKA1Q96BD8 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
SKA1Q96BD8 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SKA1Q96BD8 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
SKA1Q96BD8 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
SKA1Q96BD8 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SKA1Q96BD8 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SKA1Q96BD8 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC19.74■□□□□ 0.75
SKA1Q96BD8 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC19.74■□□□□ 0.75
SKA1Q96BD8 F2R-202ENST00000505600 442 ntTSL 2 BASIC19.74■□□□□ 0.75
SKA1Q96BD8 NEFHP1-201ENST00000412845 2629 ntBASIC19.74■□□□□ 0.75
SKA1Q96BD8 STX6-204ENST00000542060 4809 ntTSL 2 BASIC19.74■□□□□ 0.75
SKA1Q96BD8 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC19.74■□□□□ 0.75
SKA1Q96BD8 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SKA1Q96BD8 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SKA1Q96BD8 Z82202.1-201ENST00000623446 1880 ntBASIC19.73■□□□□ 0.75
SKA1Q96BD8 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA1Q96BD8 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
SKA1Q96BD8 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA1Q96BD8 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA1Q96BD8 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA1Q96BD8 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA1Q96BD8 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SKA1Q96BD8 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA1Q96BD8 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC19.73■□□□□ 0.75
SKA1Q96BD8 FAM197Y1-201ENST00000421178 764 ntBASIC19.73■□□□□ 0.75
SKA1Q96BD8 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC19.73■□□□□ 0.75
SKA1Q96BD8 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC19.73■□□□□ 0.75
SKA1Q96BD8 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.73■□□□□ 0.75
SKA1Q96BD8 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC19.73■□□□□ 0.75
SKA1Q96BD8 GRAP-204ENST00000573099 846 ntTSL 3 BASIC19.73■□□□□ 0.75
SKA1Q96BD8 AL353708.3-201ENST00000610272 989 ntBASIC19.73■□□□□ 0.75
SKA1Q96BD8 AC124283.5-201ENST00000624661 1809 ntBASIC19.73■□□□□ 0.75
SKA1Q96BD8 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA1Q96BD8 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SKA1Q96BD8 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA1Q96BD8 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SKA1Q96BD8 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.73■□□□□ 0.75
SKA1Q96BD8 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC19.73■□□□□ 0.75
SKA1Q96BD8 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC19.73■□□□□ 0.75
SKA1Q96BD8 EPS8L2-230ENST00000610855 1633 ntTSL 5 BASIC19.73■□□□□ 0.75
SKA1Q96BD8 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SKA1Q96BD8 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SKA1Q96BD8 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SKA1Q96BD8 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.72■□□□□ 0.75
SKA1Q96BD8 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SKA1Q96BD8 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
SKA1Q96BD8 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
SKA1Q96BD8 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
SKA1Q96BD8 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC19.72■□□□□ 0.75
SKA1Q96BD8 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SKA1Q96BD8 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.72■□□□□ 0.75
SKA1Q96BD8 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC19.72■□□□□ 0.75
SKA1Q96BD8 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
SKA1Q96BD8 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC19.72■□□□□ 0.75
SKA1Q96BD8 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SKA1Q96BD8 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SKA1Q96BD8 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC19.72■□□□□ 0.75
SKA1Q96BD8 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC19.72■□□□□ 0.75
SKA1Q96BD8 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SKA1Q96BD8 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SKA1Q96BD8 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms