Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SHROOM3Q8TF72 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 FAM86C1-203ENST00000426628 952 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 Z85996.1-201ENST00000494644 937 ntBASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 ZNF667-AS1-206ENST00000591797 535 ntTSL 5 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 SPIB-206ENST00000596074 847 ntTSL 2 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 ABBA01031674.1-201ENST00000635145 728 ntBASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 PENK-204ENST00000518770 863 ntTSL 2 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.66■□□□□ 0.74
SHROOM3Q8TF72 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 AL049637.2-201ENST00000641778 930 ntBASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 AL031985.4-201ENST00000642138 673 ntBASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 HTR7P1-201ENST00000538670 1336 ntBASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 OGFOD2-201ENST00000228922 1780 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 FP475955.4-201ENST00000623131 1990 ntBASIC19.65■□□□□ 0.74
SHROOM3Q8TF72 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
SHROOM3Q8TF72 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
SHROOM3Q8TF72 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC19.64■□□□□ 0.74
SHROOM3Q8TF72 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SHROOM3Q8TF72 AP002982.1-201ENST00000492365 877 ntBASIC19.64■□□□□ 0.74
SHROOM3Q8TF72 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
SHROOM3Q8TF72 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC19.64■□□□□ 0.74
SHROOM3Q8TF72 AL161938.1-201ENST00000569833 2180 ntBASIC19.64■□□□□ 0.74
SHROOM3Q8TF72 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.74
SHROOM3Q8TF72 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
SHROOM3Q8TF72 SRI-203ENST00000419179 1307 ntTSL 2 BASIC19.64■□□□□ 0.74
SHROOM3Q8TF72 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 FN3KRP-201ENST00000269373 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 AF186192.3-201ENST00000583427 947 ntBASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 KMT5B-203ENST00000401547 2666 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
SHROOM3Q8TF72 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms