Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC60Q8IWA6 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.45■■□□□ 1.02
CCDC60Q8IWA6 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC60Q8IWA6 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC21.45■■□□□ 1.02
CCDC60Q8IWA6 AC010331.1-201ENST00000611423 582 ntBASIC21.45■■□□□ 1.02
CCDC60Q8IWA6 AL023803.3-201ENST00000615559 522 ntBASIC21.45■■□□□ 1.02
CCDC60Q8IWA6 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
CCDC60Q8IWA6 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC60Q8IWA6 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC60Q8IWA6 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CCDC60Q8IWA6 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
CCDC60Q8IWA6 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC60Q8IWA6 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC21.45■■□□□ 1.02
CCDC60Q8IWA6 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 INSIG1-202ENST00000342407 1127 ntTSL 2 BASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 SLC25A1P2-201ENST00000430693 912 ntBASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 AL137013.1-201ENST00000432946 1228 ntBASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 AC128688.1-201ENST00000487626 519 ntBASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 AC092338.2-201ENST00000568827 1415 ntBASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC21.44■■□□□ 1.02
CCDC60Q8IWA6 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 TNNT3-206ENST00000381579 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 MCF2L-207ENST00000397024 490 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 AC007663.1-201ENST00000438948 1240 ntBASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 AC116562.4-202ENST00000641738 218 ntBASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 LGALS9-202ENST00000313648 1378 ntTSL 3 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 GPR139-202ENST00000570682 1613 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
CCDC60Q8IWA6 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC60Q8IWA6 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC60Q8IWA6 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC60Q8IWA6 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC21.42■■□□□ 1.02
CCDC60Q8IWA6 BID-204ENST00000399767 2129 ntTSL 2 BASIC21.42■■□□□ 1.02
CCDC60Q8IWA6 CCR12P-201ENST00000446203 998 ntBASIC21.42■■□□□ 1.02
CCDC60Q8IWA6 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
CCDC60Q8IWA6 PRSS44-201ENST00000515154 1146 ntBASIC21.42■■□□□ 1.02
CCDC60Q8IWA6 CFL2-205ENST00000555765 632 ntTSL 2 BASIC21.42■■□□□ 1.02
CCDC60Q8IWA6 RBM42-202ENST00000586618 771 ntTSL 3 BASIC21.42■■□□□ 1.02
CCDC60Q8IWA6 AFG3L1P-217ENST00000557444 2447 ntBASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 AC073130.3-201ENST00000624389 2278 ntBASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 TMSB4X-203ENST00000380636 1702 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 PLAUR-203ENST00000340093 1548 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
CCDC60Q8IWA6 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC60Q8IWA6 SBDS-201ENST00000246868 1631 ntAPPRIS P2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC60Q8IWA6 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC60Q8IWA6 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC60Q8IWA6 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
CCDC60Q8IWA6 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC60Q8IWA6 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC60Q8IWA6 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC60Q8IWA6 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
CCDC60Q8IWA6 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms