Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 Z82202.1-201ENST00000623446 1880 ntBASIC22.09■■□□□ 1.13
SH3RF1Q7Z6J0 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
SH3RF1Q7Z6J0 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC22.09■■□□□ 1.13
SH3RF1Q7Z6J0 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
SH3RF1Q7Z6J0 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC22.09■■□□□ 1.13
SH3RF1Q7Z6J0 LTBR-211ENST00000543190 785 ntTSL 3 BASIC22.09■■□□□ 1.13
SH3RF1Q7Z6J0 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
SH3RF1Q7Z6J0 AL358472.4-201ENST00000633140 710 ntBASIC22.09■■□□□ 1.13
SH3RF1Q7Z6J0 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC22.09■■□□□ 1.13
SH3RF1Q7Z6J0 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC22.09■■□□□ 1.13
SH3RF1Q7Z6J0 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC22.09■■□□□ 1.13
SH3RF1Q7Z6J0 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 KRT18-207ENST00000550600 1696 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 BX323043.1-201ENST00000641006 1765 ntBASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 VSIG2-202ENST00000403470 1191 ntTSL 2 BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 LIN28AP1-201ENST00000429574 405 ntBASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 ECEL1P2-202ENST00000465689 757 ntBASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 TMEM185A-204ENST00000507237 903 ntTSL 2 BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
SH3RF1Q7Z6J0 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC22.08■■□□□ 1.12
SH3RF1Q7Z6J0 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.12
SH3RF1Q7Z6J0 AC018553.1-201ENST00000616682 1458 ntBASIC22.08■■□□□ 1.12
SH3RF1Q7Z6J0 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC22.08■■□□□ 1.12
SH3RF1Q7Z6J0 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC22.08■■□□□ 1.12
SH3RF1Q7Z6J0 AC116351.2-201ENST00000606540 1585 ntBASIC22.08■■□□□ 1.12
SH3RF1Q7Z6J0 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 LGALS8-AS1-201ENST00000487567 1457 ntBASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
SH3RF1Q7Z6J0 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 PPM1D-204ENST00000629650 1525 ntTSL 5 BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 PRR31-201ENST00000371629 978 ntTSL 2 BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 ATP5G1P1-201ENST00000448724 379 ntBASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 ALKBH6-213ENST00000486389 1525 ntTSL 3 BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
SH3RF1Q7Z6J0 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 MESTP1-201ENST00000404287 994 ntBASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 METTL23-204ENST00000586752 904 ntTSL 2 BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 SYNGR4-202ENST00000595322 533 ntTSL 3 BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 HMCES-201ENST00000383463 2515 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
SH3RF1Q7Z6J0 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 AC018445.3-201ENST00000624177 1945 ntBASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC22.04■■□□□ 1.12
SH3RF1Q7Z6J0 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC22.04■■□□□ 1.12
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms