Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
CCDC144BQ3MJ40 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 WNT10B-201ENST00000301061 2274 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 TMPRSS6-207ENST00000442782 1695 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
CCDC144BQ3MJ40 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 KRT18P22-201ENST00000402024 1347 ntBASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 KRT18P57-201ENST00000443599 1254 ntBASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 AL590326.2-201ENST00000625139 305 ntBASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 AP006587.1-201ENST00000534129 1502 ntBASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
CCDC144BQ3MJ40 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 ACTR8-202ENST00000482349 2091 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 MAGI2-AS3-203ENST00000424477 520 ntTSL 4 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 GCHFR-205ENST00000559932 695 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 C1QL1P1-201ENST00000568105 661 ntBASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 AL031985.4-201ENST00000642138 673 ntBASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC22.34■■□□□ 1.17
CCDC144BQ3MJ40 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 AL691432.2-201ENST00000607222 2038 ntBASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 SENP6-201ENST00000327284 2700 ntTSL 2 BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 TERF1P1-201ENST00000311003 1181 ntBASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 CRAT-202ENST00000393384 973 ntTSL 2 BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 CAMKK2-206ENST00000402834 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 TMEM91-203ENST00000392002 1389 ntAPPRIS P1 TSL 2 BASIC22.33■■□□□ 1.17
CCDC144BQ3MJ40 AC093484.2-201ENST00000580996 2166 ntBASIC22.33■■□□□ 1.16
CCDC144BQ3MJ40 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC22.33■■□□□ 1.16
CCDC144BQ3MJ40 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC144BQ3MJ40 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.16
CCDC144BQ3MJ40 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 TMA16-209ENST00000513272 803 ntTSL 2 BASIC22.32■■□□□ 1.16
CCDC144BQ3MJ40 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC22.32■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms