Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
RNF4P78317 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
RNF4P78317 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RNF4P78317 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RNF4P78317 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC17.85■□□□□ 0.45
RNF4P78317 DERL1-203ENST00000419562 918 ntTSL 2 BASIC17.85■□□□□ 0.45
RNF4P78317 KCNIP4-206ENST00000447367 1641 ntTSL 5 BASIC17.85■□□□□ 0.45
RNF4P78317 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
RNF4P78317 AC091390.4-202ENST00000476426 537 ntBASIC17.85■□□□□ 0.45
RNF4P78317 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC17.85■□□□□ 0.45
RNF4P78317 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC17.85■□□□□ 0.45
RNF4P78317 AC079598.2-202ENST00000546624 1451 ntBASIC17.85■□□□□ 0.45
RNF4P78317 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC17.85■□□□□ 0.45
RNF4P78317 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
RNF4P78317 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC17.85■□□□□ 0.45
RNF4P78317 DGCR10-201ENST00000609839 495 ntBASIC17.85■□□□□ 0.45
RNF4P78317 AC103746.1-201ENST00000617440 1133 ntTSL 3 BASIC17.85■□□□□ 0.45
RNF4P78317 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
RNF4P78317 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
RNF4P78317 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF4P78317 SLC35A3-205ENST00000465289 5696 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
RNF4P78317 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC17.84■□□□□ 0.45
RNF4P78317 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
RNF4P78317 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF4P78317 XYLT1-201ENST00000261381 9891 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF4P78317 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF4P78317 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF4P78317 KRT8P41-201ENST00000533985 1514 ntBASIC17.84■□□□□ 0.45
RNF4P78317 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF4P78317 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RNF4P78317 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF4P78317 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RNF4P78317 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
RNF4P78317 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF4P78317 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF4P78317 AC008040.2-201ENST00000461049 708 ntBASIC17.84■□□□□ 0.45
RNF4P78317 NEURL1B-202ENST00000520919 1089 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RNF4P78317 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC17.84■□□□□ 0.45
RNF4P78317 CIRBP-217ENST00000588230 1013 ntTSL 5 BASIC17.84■□□□□ 0.45
RNF4P78317 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RNF4P78317 AP000525.1-201ENST00000608286 694 ntBASIC17.84■□□□□ 0.45
RNF4P78317 AC073912.3-201ENST00000624414 853 ntBASIC17.84■□□□□ 0.45
RNF4P78317 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC17.84■□□□□ 0.45
RNF4P78317 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF4P78317 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
RNF4P78317 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC17.84■□□□□ 0.45
RNF4P78317 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
RNF4P78317 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
RNF4P78317 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
RNF4P78317 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
RNF4P78317 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC17.83■□□□□ 0.45
RNF4P78317 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
RNF4P78317 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
RNF4P78317 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC17.83■□□□□ 0.45
RNF4P78317 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC17.83■□□□□ 0.44
RNF4P78317 FAM207BP-201ENST00000447172 505 ntBASIC17.83■□□□□ 0.44
RNF4P78317 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC17.83■□□□□ 0.44
RNF4P78317 KCNIP3-205ENST00000468529 985 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RNF4P78317 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC17.83■□□□□ 0.44
RNF4P78317 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.83■□□□□ 0.44
RNF4P78317 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC17.83■□□□□ 0.44
RNF4P78317 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC17.83■□□□□ 0.44
RNF4P78317 GRAMD4P8-201ENST00000605465 1115 ntBASIC17.83■□□□□ 0.44
RNF4P78317 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RNF4P78317 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
RNF4P78317 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
RNF4P78317 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
RNF4P78317 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RNF4P78317 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.83■□□□□ 0.44
RNF4P78317 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
RNF4P78317 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
RNF4P78317 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
RNF4P78317 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RNF4P78317 SDHAP1-207ENST00000440850 2000 ntBASIC17.82■□□□□ 0.44
RNF4P78317 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RNF4P78317 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC17.82■□□□□ 0.44
RNF4P78317 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC17.82■□□□□ 0.44
RNF4P78317 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.82■□□□□ 0.44
RNF4P78317 STX6-204ENST00000542060 4809 ntTSL 2 BASIC17.82■□□□□ 0.44
RNF4P78317 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC17.82■□□□□ 0.44
RNF4P78317 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RNF4P78317 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC17.82■□□□□ 0.44
RNF4P78317 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
RNF4P78317 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC17.82■□□□□ 0.44
RNF4P78317 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
RNF4P78317 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RNF4P78317 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RNF4P78317 AC097488.1-201ENST00000507834 756 ntBASIC17.82■□□□□ 0.44
RNF4P78317 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RNF4P78317 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC17.82■□□□□ 0.44
RNF4P78317 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC17.82■□□□□ 0.44
RNF4P78317 AP000692.2-201ENST00000608391 879 ntBASIC17.82■□□□□ 0.44
RNF4P78317 ANKRD54-211ENST00000609454 825 ntTSL 3 BASIC17.82■□□□□ 0.44
RNF4P78317 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC17.82■□□□□ 0.44
RNF4P78317 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RNF4P78317 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC17.82■□□□□ 0.44
RNF4P78317 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
RNF4P78317 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
RNF4P78317 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
RNF4P78317 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 36.5 ms