Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.12■□□□□ 0.81
HDAC4P56524 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC4P56524 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC4P56524 PTGES2-AS1-201ENST00000443493 2100 ntBASIC20.12■□□□□ 0.81
HDAC4P56524 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC4P56524 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
HDAC4P56524 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
HDAC4P56524 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
HDAC4P56524 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC20.12■□□□□ 0.81
HDAC4P56524 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.12■□□□□ 0.81
HDAC4P56524 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC20.12■□□□□ 0.81
HDAC4P56524 AL158047.1-201ENST00000445918 881 ntBASIC20.12■□□□□ 0.81
HDAC4P56524 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC20.12■□□□□ 0.81
HDAC4P56524 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC20.12■□□□□ 0.81
HDAC4P56524 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.12■□□□□ 0.81
HDAC4P56524 SPIB-206ENST00000596074 847 ntTSL 2 BASIC20.12■□□□□ 0.81
HDAC4P56524 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC20.12■□□□□ 0.81
HDAC4P56524 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.12■□□□□ 0.81
HDAC4P56524 CROCCP4-202ENST00000633627 573 ntTSL 3 BASIC20.12■□□□□ 0.81
HDAC4P56524 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.12■□□□□ 0.81
HDAC4P56524 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC4P56524 TEX21P-204ENST00000641479 1693 ntBASIC20.12■□□□□ 0.81
HDAC4P56524 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC4P56524 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC4P56524 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
HDAC4P56524 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
HDAC4P56524 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
HDAC4P56524 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 CHMP6-201ENST00000325167 1664 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
HDAC4P56524 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.11■□□□□ 0.81
HDAC4P56524 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.11■□□□□ 0.81
HDAC4P56524 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC20.11■□□□□ 0.81
HDAC4P56524 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC20.11■□□□□ 0.81
HDAC4P56524 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.11■□□□□ 0.81
HDAC4P56524 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.11■□□□□ 0.81
HDAC4P56524 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC20.11■□□□□ 0.81
HDAC4P56524 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
HDAC4P56524 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.11■□□□□ 0.81
HDAC4P56524 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
HDAC4P56524 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
HDAC4P56524 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC20.1■□□□□ 0.81
HDAC4P56524 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC20.1■□□□□ 0.81
HDAC4P56524 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 ISOC2-203ENST00000438389 1566 ntTSL 2 BASIC20.1■□□□□ 0.81
HDAC4P56524 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
HDAC4P56524 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC20.1■□□□□ 0.81
HDAC4P56524 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.1■□□□□ 0.81
HDAC4P56524 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.1■□□□□ 0.81
HDAC4P56524 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 NIFKP9-201ENST00000419265 221 ntBASIC20.1■□□□□ 0.81
HDAC4P56524 FDX2-207ENST00000494368 584 ntTSL 4 BASIC20.1■□□□□ 0.81
HDAC4P56524 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC20.1■□□□□ 0.81
HDAC4P56524 RARRES2P10-201ENST00000564312 460 ntBASIC20.1■□□□□ 0.81
HDAC4P56524 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC20.1■□□□□ 0.81
HDAC4P56524 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.1■□□□□ 0.81
HDAC4P56524 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 AL353708.3-201ENST00000610272 989 ntBASIC20.1■□□□□ 0.81
HDAC4P56524 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.1■□□□□ 0.81
HDAC4P56524 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC20.1■□□□□ 0.81
HDAC4P56524 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
HDAC4P56524 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
HDAC4P56524 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC20.09■□□□□ 0.81
HDAC4P56524 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
HDAC4P56524 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.09■□□□□ 0.81
HDAC4P56524 ZNF843-203ENST00000618063 1765 ntAPPRIS P2 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC4P56524 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC20.09■□□□□ 0.81
HDAC4P56524 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC4P56524 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
HDAC4P56524 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
HDAC4P56524 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
HDAC4P56524 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms