Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC20.05■□□□□ 0.8
PTPN9P43378 AC026271.3-201ENST00000571884 352 ntBASIC20.05■□□□□ 0.8
PTPN9P43378 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.05■□□□□ 0.8
PTPN9P43378 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN9P43378 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN9P43378 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN9P43378 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN9P43378 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.05■□□□□ 0.8
PTPN9P43378 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC20.05■□□□□ 0.8
PTPN9P43378 IL6R-208ENST00000622330 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN9P43378 HEXDC-201ENST00000327949 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PTPN9P43378 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.05■□□□□ 0.8
PTPN9P43378 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN9P43378 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN9P43378 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN9P43378 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
PTPN9P43378 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
PTPN9P43378 ASMTL-201ENST00000381317 2027 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN9P43378 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN9P43378 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN9P43378 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN9P43378 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN9P43378 AC012618.2-201ENST00000428058 849 ntBASIC20.04■□□□□ 0.8
PTPN9P43378 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN9P43378 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.04■□□□□ 0.8
PTPN9P43378 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC20.04■□□□□ 0.8
PTPN9P43378 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN9P43378 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
PTPN9P43378 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC20.04■□□□□ 0.8
PTPN9P43378 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN9P43378 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN9P43378 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
PTPN9P43378 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
PTPN9P43378 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN9P43378 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
PTPN9P43378 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.03■□□□□ 0.8
PTPN9P43378 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN9P43378 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
PTPN9P43378 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN9P43378 RPS2P55-201ENST00000397318 883 ntBASIC20.03■□□□□ 0.8
PTPN9P43378 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.03■□□□□ 0.8
PTPN9P43378 SAPCD2P4-201ENST00000424595 1171 ntBASIC20.03■□□□□ 0.8
PTPN9P43378 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC20.03■□□□□ 0.8
PTPN9P43378 KCNMA1-220ENST00000481070 896 ntTSL 2 BASIC20.03■□□□□ 0.8
PTPN9P43378 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN9P43378 AC107956.1-201ENST00000494359 873 ntBASIC20.03■□□□□ 0.8
PTPN9P43378 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
PTPN9P43378 CR392000.1-201ENST00000624770 1228 ntBASIC20.03■□□□□ 0.8
PTPN9P43378 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN9P43378 KAT5-203ENST00000377046 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN9P43378 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
PTPN9P43378 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.02■□□□□ 0.8
PTPN9P43378 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN9P43378 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN9P43378 IFRD1-201ENST00000005558 1834 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN9P43378 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
PTPN9P43378 CENPA-201ENST00000233505 1299 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN9P43378 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN9P43378 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN9P43378 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC20.02■□□□□ 0.8
PTPN9P43378 AC233702.5-201ENST00000584107 538 ntBASIC20.02■□□□□ 0.8
PTPN9P43378 AL031985.4-201ENST00000642138 673 ntBASIC20.02■□□□□ 0.8
PTPN9P43378 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.02■□□□□ 0.8
PTPN9P43378 TPD52-211ENST00000519303 1594 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN9P43378 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN9P43378 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.02■□□□□ 0.8
PTPN9P43378 BX323043.1-201ENST00000641006 1765 ntBASIC20.02■□□□□ 0.8
PTPN9P43378 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC20.02■□□□□ 0.8
PTPN9P43378 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN9P43378 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC20.02■□□□□ 0.8
PTPN9P43378 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC20.02■□□□□ 0.8
PTPN9P43378 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN9P43378 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN9P43378 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
PTPN9P43378 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.79
PTPN9P43378 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
PTPN9P43378 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
PTPN9P43378 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
PTPN9P43378 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PTPN9P43378 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
PTPN9P43378 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.79
PTPN9P43378 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
PTPN9P43378 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTPN9P43378 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
PTPN9P43378 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.01■□□□□ 0.79
PTPN9P43378 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.01■□□□□ 0.79
PTPN9P43378 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
PTPN9P43378 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.01■□□□□ 0.79
PTPN9P43378 MEN1-208ENST00000394374 3155 ntAPPRIS P3 TSL 5 BASIC20.01■□□□□ 0.79
PTPN9P43378 BAALC-201ENST00000297574 801 ntTSL 3 BASIC20.01■□□□□ 0.79
PTPN9P43378 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
PTPN9P43378 TSPY23P-201ENST00000440136 739 ntBASIC20.01■□□□□ 0.79
PTPN9P43378 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PTPN9P43378 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
PTPN9P43378 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.01■□□□□ 0.79
PTPN9P43378 USP36-216ENST00000589424 970 ntTSL 5 BASIC20.01■□□□□ 0.79
PTPN9P43378 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.01■□□□□ 0.79
PTPN9P43378 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
PTPN9P43378 FGFR2-208ENST00000360144 3001 ntTSL 2 BASIC20.01■□□□□ 0.79
PTPN9P43378 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms