Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
CDH3P22223 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH3P22223 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH3P22223 DOK2-201ENST00000276420 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH3P22223 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC18.85■□□□□ 0.61
CDH3P22223 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC18.85■□□□□ 0.61
CDH3P22223 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.85■□□□□ 0.61
CDH3P22223 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
CDH3P22223 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH3P22223 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CDH3P22223 AC026471.5-201ENST00000615068 467 ntBASIC18.85■□□□□ 0.61
CDH3P22223 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH3P22223 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.85■□□□□ 0.61
CDH3P22223 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH3P22223 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CDH3P22223 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CDH3P22223 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC18.84■□□□□ 0.61
CDH3P22223 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC18.84■□□□□ 0.61
CDH3P22223 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 OGG1-204ENST00000339511 1815 ntTSL 2 BASIC18.84■□□□□ 0.61
CDH3P22223 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC18.84■□□□□ 0.61
CDH3P22223 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CDH3P22223 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.84■□□□□ 0.61
CDH3P22223 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
CDH3P22223 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
CDH3P22223 NIFKP9-201ENST00000419265 221 ntBASIC18.84■□□□□ 0.61
CDH3P22223 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.84■□□□□ 0.61
CDH3P22223 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.84■□□□□ 0.61
CDH3P22223 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC18.84■□□□□ 0.61
CDH3P22223 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC18.84■□□□□ 0.61
CDH3P22223 GRAP-204ENST00000573099 846 ntTSL 3 BASIC18.84■□□□□ 0.61
CDH3P22223 CR392000.1-201ENST00000624770 1228 ntBASIC18.84■□□□□ 0.61
CDH3P22223 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC18.84■□□□□ 0.61
CDH3P22223 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC18.84■□□□□ 0.61
CDH3P22223 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CDH3P22223 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH3P22223 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH3P22223 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH3P22223 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CDH3P22223 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH3P22223 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH3P22223 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.61
CDH3P22223 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CDH3P22223 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.83■□□□□ 0.61
CDH3P22223 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CDH3P22223 TMEM179-206ENST00000616017 1645 ntBASIC18.83■□□□□ 0.61
CDH3P22223 AC099778.1-201ENST00000568593 1911 ntBASIC18.83■□□□□ 0.6
CDH3P22223 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH3P22223 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC18.83■□□□□ 0.6
CDH3P22223 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH3P22223 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH3P22223 KSR1P1-201ENST00000446298 240 ntBASIC18.83■□□□□ 0.6
CDH3P22223 MIXL1-202ENST00000542034 839 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CDH3P22223 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.83■□□□□ 0.6
CDH3P22223 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC18.83■□□□□ 0.6
CDH3P22223 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH3P22223 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CDH3P22223 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH3P22223 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CDH3P22223 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH3P22223 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.83■□□□□ 0.6
CDH3P22223 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.83■□□□□ 0.6
CDH3P22223 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CDH3P22223 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CDH3P22223 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CDH3P22223 GIPR-202ENST00000304207 1432 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CDH3P22223 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC18.83■□□□□ 0.6
CDH3P22223 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC18.82■□□□□ 0.6
CDH3P22223 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC18.82■□□□□ 0.6
CDH3P22223 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC18.82■□□□□ 0.6
CDH3P22223 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 LHX3-202ENST00000371748 2365 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.82■□□□□ 0.6
CDH3P22223 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC18.82■□□□□ 0.6
CDH3P22223 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CDH3P22223 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 18.6 ms