Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
APOEP02649 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
APOEP02649 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.18■□□□□ 0.82
APOEP02649 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
APOEP02649 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC20.18■□□□□ 0.82
APOEP02649 PENK-204ENST00000518770 863 ntTSL 2 BASIC20.18■□□□□ 0.82
APOEP02649 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.18■□□□□ 0.82
APOEP02649 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.18■□□□□ 0.82
APOEP02649 AL445675.2-201ENST00000620291 557 ntBASIC20.18■□□□□ 0.82
APOEP02649 CR392000.1-201ENST00000624770 1228 ntBASIC20.18■□□□□ 0.82
APOEP02649 TREX1-205ENST00000625293 1783 ntBASIC20.18■□□□□ 0.82
APOEP02649 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
APOEP02649 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
APOEP02649 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
APOEP02649 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
APOEP02649 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 NPTX1-201ENST00000306773 5122 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC20.17■□□□□ 0.82
APOEP02649 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC20.17■□□□□ 0.82
APOEP02649 CLDND2-201ENST00000291715 974 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
APOEP02649 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20.17■□□□□ 0.82
APOEP02649 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.17■□□□□ 0.82
APOEP02649 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.17■□□□□ 0.82
APOEP02649 MIR4497-201ENST00000583208 89 ntBASIC20.17■□□□□ 0.82
APOEP02649 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.17■□□□□ 0.82
APOEP02649 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC20.17■□□□□ 0.82
APOEP02649 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.17■□□□□ 0.82
APOEP02649 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.17■□□□□ 0.82
APOEP02649 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 AC087289.5-201ENST00000586076 3175 ntBASIC20.17■□□□□ 0.82
APOEP02649 B4GALT2-201ENST00000309519 2004 ntTSL 2 BASIC20.17■□□□□ 0.82
APOEP02649 MACROD2-201ENST00000217246 4994 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
APOEP02649 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
APOEP02649 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
APOEP02649 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.17■□□□□ 0.82
APOEP02649 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC20.17■□□□□ 0.82
APOEP02649 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
APOEP02649 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
APOEP02649 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
APOEP02649 KCNK4-207ENST00000539216 1723 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
APOEP02649 SLC52A2-209ENST00000530047 1757 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
APOEP02649 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
APOEP02649 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
APOEP02649 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
APOEP02649 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
APOEP02649 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
APOEP02649 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
APOEP02649 AL596275.1-201ENST00000423464 877 ntBASIC20.16■□□□□ 0.82
APOEP02649 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.16■□□□□ 0.82
APOEP02649 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.16■□□□□ 0.82
APOEP02649 MIR4785-201ENST00000585005 73 ntBASIC20.16■□□□□ 0.82
APOEP02649 HLA-A-209ENST00000638375 975 ntBASIC20.16■□□□□ 0.82
APOEP02649 SRI-203ENST00000419179 1307 ntTSL 2 BASIC20.16■□□□□ 0.82
APOEP02649 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
APOEP02649 CSF1-203ENST00000369801 1364 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
APOEP02649 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
APOEP02649 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
APOEP02649 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
APOEP02649 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
APOEP02649 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
APOEP02649 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
APOEP02649 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
APOEP02649 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC20.15■□□□□ 0.82
APOEP02649 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
APOEP02649 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
APOEP02649 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
APOEP02649 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
APOEP02649 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
APOEP02649 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
APOEP02649 TSPY7P-201ENST00000431358 1114 ntBASIC20.15■□□□□ 0.82
APOEP02649 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC20.15■□□□□ 0.82
APOEP02649 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.15■□□□□ 0.82
APOEP02649 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.15■□□□□ 0.82
APOEP02649 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.15■□□□□ 0.82
APOEP02649 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.15■□□□□ 0.82
APOEP02649 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
APOEP02649 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
APOEP02649 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.15■□□□□ 0.82
APOEP02649 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
APOEP02649 L2HGDH-203ENST00000421284 1958 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
APOEP02649 MAGED2-203ENST00000375053 2066 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
APOEP02649 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
APOEP02649 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
APOEP02649 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.82
APOEP02649 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.82
APOEP02649 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC20.14■□□□□ 0.82
APOEP02649 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
APOEP02649 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.14■□□□□ 0.81
APOEP02649 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 53.1 ms