Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
CLDN9O95484 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 CMTM7-201ENST00000334983 2038 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 TCTA-201ENST00000273590 2146 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC18.64■□□□□ 0.57
CLDN9O95484 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
CLDN9O95484 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
CLDN9O95484 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CLDN9O95484 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CLDN9O95484 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.63■□□□□ 0.57
CLDN9O95484 OTOP3-201ENST00000328801 2363 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CLDN9O95484 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CLDN9O95484 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
CLDN9O95484 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
CLDN9O95484 GMPPA-203ENST00000358215 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CLDN9O95484 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC18.63■□□□□ 0.57
CLDN9O95484 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CLDN9O95484 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CLDN9O95484 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC18.63■□□□□ 0.57
CLDN9O95484 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.63■□□□□ 0.57
CLDN9O95484 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.63■□□□□ 0.57
CLDN9O95484 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.63■□□□□ 0.57
CLDN9O95484 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.63■□□□□ 0.57
CLDN9O95484 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CLDN9O95484 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC18.63■□□□□ 0.57
CLDN9O95484 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC18.63■□□□□ 0.57
CLDN9O95484 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC18.63■□□□□ 0.57
CLDN9O95484 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.63■□□□□ 0.57
CLDN9O95484 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.63■□□□□ 0.57
CLDN9O95484 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CLDN9O95484 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN9O95484 ACD-202ENST00000393919 1974 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN9O95484 CDK18-217ENST00000506784 2143 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN9O95484 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC18.62■□□□□ 0.57
CLDN9O95484 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC18.62■□□□□ 0.57
CLDN9O95484 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC18.62■□□□□ 0.57
CLDN9O95484 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
CLDN9O95484 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CLDN9O95484 KANSL1-AS1-203ENST00000572973 424 ntTSL 3 BASIC18.62■□□□□ 0.57
CLDN9O95484 AC004264.1-201ENST00000608354 794 ntBASIC18.62■□□□□ 0.57
CLDN9O95484 AC069544.1-201ENST00000609399 999 ntBASIC18.62■□□□□ 0.57
CLDN9O95484 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.62■□□□□ 0.57
CLDN9O95484 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
CLDN9O95484 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN9O95484 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN9O95484 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN9O95484 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC18.62■□□□□ 0.57
CLDN9O95484 AL049812.1-201ENST00000432563 2267 ntBASIC18.62■□□□□ 0.57
CLDN9O95484 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN9O95484 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CLDN9O95484 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC18.62■□□□□ 0.57
CLDN9O95484 SYNDIG1L-201ENST00000331628 2607 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CLDN9O95484 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.61■□□□□ 0.57
CLDN9O95484 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC18.61■□□□□ 0.57
CLDN9O95484 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CLDN9O95484 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC18.61■□□□□ 0.57
CLDN9O95484 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
CLDN9O95484 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.61■□□□□ 0.57
CLDN9O95484 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 C1orf50-201ENST00000372525 996 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 KRT18P6-201ENST00000555540 1265 ntBASIC18.61■□□□□ 0.57
CLDN9O95484 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 MTDHP1-201ENST00000605323 784 ntBASIC18.61■□□□□ 0.57
CLDN9O95484 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC18.61■□□□□ 0.57
CLDN9O95484 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 AC093503.3-201ENST00000624917 2352 ntBASIC18.61■□□□□ 0.57
CLDN9O95484 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC18.61■□□□□ 0.57
CLDN9O95484 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CLDN9O95484 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms