Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 AL162377.1-201ENST00000618844 1793 ntBASIC24.75■■□□□ 1.55
PTCD1O75127 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
PTCD1O75127 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PTCD1O75127 BUD23-201ENST00000265758 1230 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PTCD1O75127 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
PTCD1O75127 AC005056.1-201ENST00000435932 532 ntTSL 4 BASIC24.74■■□□□ 1.55
PTCD1O75127 PHB2-202ENST00000440277 996 ntTSL 5 BASIC24.74■■□□□ 1.55
PTCD1O75127 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC24.74■■□□□ 1.55
PTCD1O75127 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC24.74■■□□□ 1.55
PTCD1O75127 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC24.74■■□□□ 1.55
PTCD1O75127 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC24.74■■□□□ 1.55
PTCD1O75127 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC24.74■■□□□ 1.55
PTCD1O75127 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC24.74■■□□□ 1.55
PTCD1O75127 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC24.74■■□□□ 1.55
PTCD1O75127 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
PTCD1O75127 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
PTCD1O75127 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC24.74■■□□□ 1.55
PTCD1O75127 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
PTCD1O75127 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC24.73■■□□□ 1.55
PTCD1O75127 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PTCD1O75127 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC24.73■■□□□ 1.55
PTCD1O75127 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PTCD1O75127 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PTCD1O75127 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC24.73■■□□□ 1.55
PTCD1O75127 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
PTCD1O75127 TBC1D3P2-202ENST00000577902 1649 ntBASIC24.73■■□□□ 1.55
PTCD1O75127 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC24.73■■□□□ 1.55
PTCD1O75127 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC24.73■■□□□ 1.55
PTCD1O75127 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PTCD1O75127 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC24.73■■□□□ 1.55
PTCD1O75127 IPPK-202ENST00000375522 882 ntTSL 3 BASIC24.73■■□□□ 1.55
PTCD1O75127 FXN-203ENST00000396366 922 ntTSL 2 BASIC24.73■■□□□ 1.55
PTCD1O75127 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC24.73■■□□□ 1.55
PTCD1O75127 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
PTCD1O75127 IGHMBP2-205ENST00000539224 785 ntTSL 3 BASIC24.73■■□□□ 1.55
PTCD1O75127 MIR4674-201ENST00000582457 87 ntBASIC24.73■■□□□ 1.55
PTCD1O75127 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC24.73■■□□□ 1.55
PTCD1O75127 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC24.73■■□□□ 1.55
PTCD1O75127 AC064834.1-201ENST00000606986 503 ntTSL 3 BASIC24.73■■□□□ 1.55
PTCD1O75127 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC24.73■■□□□ 1.55
PTCD1O75127 AC083849.1-201ENST00000615227 514 ntBASIC24.73■■□□□ 1.55
PTCD1O75127 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PTCD1O75127 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PTCD1O75127 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
PTCD1O75127 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PTCD1O75127 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC24.72■■□□□ 1.55
PTCD1O75127 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC24.72■■□□□ 1.55
PTCD1O75127 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC24.72■■□□□ 1.55
PTCD1O75127 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PTCD1O75127 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
PTCD1O75127 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC24.72■■□□□ 1.55
PTCD1O75127 HCG4P8-203ENST00000443049 980 ntBASIC24.72■■□□□ 1.55
PTCD1O75127 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC24.72■■□□□ 1.55
PTCD1O75127 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC24.72■■□□□ 1.55
PTCD1O75127 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC24.72■■□□□ 1.55
PTCD1O75127 HYMAI.1-201ENST00000620949 238 ntBASIC24.72■■□□□ 1.55
PTCD1O75127 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PTCD1O75127 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
PTCD1O75127 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC24.72■■□□□ 1.55
PTCD1O75127 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
PTCD1O75127 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC24.71■■□□□ 1.55
PTCD1O75127 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD1O75127 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD1O75127 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC24.71■■□□□ 1.55
PTCD1O75127 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD1O75127 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD1O75127 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD1O75127 BUB3-202ENST00000368859 667 ntTSL 3 BASIC24.71■■□□□ 1.55
PTCD1O75127 AL136038.3-201ENST00000561909 1096 ntBASIC24.71■■□□□ 1.55
PTCD1O75127 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD1O75127 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD1O75127 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD1O75127 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD1O75127 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD1O75127 RAB5C-202ENST00000393860 1912 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
PTCD1O75127 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC24.7■■□□□ 1.55
PTCD1O75127 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PTCD1O75127 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
PTCD1O75127 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC24.7■■□□□ 1.54
PTCD1O75127 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC24.7■■□□□ 1.54
PTCD1O75127 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PTCD1O75127 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC24.7■■□□□ 1.54
PTCD1O75127 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC24.7■■□□□ 1.54
PTCD1O75127 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PTCD1O75127 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC24.7■■□□□ 1.54
PTCD1O75127 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC24.7■■□□□ 1.54
PTCD1O75127 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC24.7■■□□□ 1.54
PTCD1O75127 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PTCD1O75127 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC24.7■■□□□ 1.54
PTCD1O75127 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC24.7■■□□□ 1.54
PTCD1O75127 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PTCD1O75127 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PTCD1O75127 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC24.7■■□□□ 1.54
PTCD1O75127 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
PTCD1O75127 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC24.69■■□□□ 1.54
PTCD1O75127 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC24.69■■□□□ 1.54
PTCD1O75127 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC24.69■■□□□ 1.54
PTCD1O75127 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PTCD1O75127 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC24.69■■□□□ 1.54
PTCD1O75127 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC24.69■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms