Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SDC3O75056 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SDC3O75056 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SDC3O75056 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SDC3O75056 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
SDC3O75056 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
SDC3O75056 BCKDK-202ENST00000287507 1907 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SDC3O75056 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.83■□□□□ 0.6
SDC3O75056 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC18.83■□□□□ 0.6
SDC3O75056 NDUFA1-201ENST00000371437 766 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SDC3O75056 RNF144A-AS1-204ENST00000437589 618 ntTSL 2 BASIC18.83■□□□□ 0.6
SDC3O75056 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.83■□□□□ 0.6
SDC3O75056 CD320-202ENST00000537716 1119 ntTSL 2 BASIC18.83■□□□□ 0.6
SDC3O75056 METTL23-204ENST00000586752 904 ntTSL 2 BASIC18.83■□□□□ 0.6
SDC3O75056 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC18.83■□□□□ 0.6
SDC3O75056 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.83■□□□□ 0.6
SDC3O75056 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC18.83■□□□□ 0.6
SDC3O75056 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SDC3O75056 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SDC3O75056 ANXA8L1-203ENST00000613703 1874 ntTSL 2 BASIC18.83■□□□□ 0.6
SDC3O75056 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SDC3O75056 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SDC3O75056 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SDC3O75056 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SDC3O75056 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SDC3O75056 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SDC3O75056 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
SDC3O75056 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
SDC3O75056 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC18.82■□□□□ 0.6
SDC3O75056 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC3O75056 ENOPH1-203ENST00000509635 1874 ntTSL 3 BASIC18.82■□□□□ 0.6
SDC3O75056 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC3O75056 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC3O75056 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.82■□□□□ 0.6
SDC3O75056 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.82■□□□□ 0.6
SDC3O75056 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC3O75056 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC3O75056 CA15P1-201ENST00000481698 905 ntBASIC18.82■□□□□ 0.6
SDC3O75056 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
SDC3O75056 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SDC3O75056 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC18.82■□□□□ 0.6
SDC3O75056 AL441883.1-201ENST00000566170 1045 ntBASIC18.82■□□□□ 0.6
SDC3O75056 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC3O75056 RPARP-AS1-206ENST00000596366 631 ntTSL 3 BASIC18.82■□□□□ 0.6
SDC3O75056 AC140113.3-201ENST00000605663 199 ntBASIC18.82■□□□□ 0.6
SDC3O75056 AL513523.10-201ENST00000623024 1186 ntAPPRIS P1 TSL 5 BASIC18.82■□□□□ 0.6
SDC3O75056 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC3O75056 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC3O75056 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.82■□□□□ 0.6
SDC3O75056 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
SDC3O75056 KRT8P45-201ENST00000414328 1447 ntBASIC18.82■□□□□ 0.6
SDC3O75056 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.82■□□□□ 0.6
SDC3O75056 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.82■□□□□ 0.6
SDC3O75056 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC18.81■□□□□ 0.6
SDC3O75056 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.81■□□□□ 0.6
SDC3O75056 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SDC3O75056 AC073130.3-201ENST00000624389 2278 ntBASIC18.81■□□□□ 0.6
SDC3O75056 AC009237.14-201ENST00000609975 1594 ntBASIC18.81■□□□□ 0.6
SDC3O75056 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.81■□□□□ 0.6
SDC3O75056 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDC3O75056 C12orf42-205ENST00000548048 1532 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SDC3O75056 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
SDC3O75056 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SDC3O75056 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SDC3O75056 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
SDC3O75056 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDC3O75056 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDC3O75056 DDRGK1-202ENST00000380201 1128 ntTSL 2 BASIC18.81■□□□□ 0.6
SDC3O75056 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
SDC3O75056 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDC3O75056 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDC3O75056 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDC3O75056 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
SDC3O75056 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC18.81■□□□□ 0.6
SDC3O75056 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
SDC3O75056 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC18.81■□□□□ 0.6
SDC3O75056 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC18.81■□□□□ 0.6
SDC3O75056 PPP1R7-207ENST00000407025 1592 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
SDC3O75056 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
SDC3O75056 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC3O75056 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
SDC3O75056 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.8■□□□□ 0.6
SDC3O75056 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC3O75056 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC18.8■□□□□ 0.6
SDC3O75056 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC3O75056 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
SDC3O75056 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC3O75056 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC18.8■□□□□ 0.6
SDC3O75056 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC18.8■□□□□ 0.6
SDC3O75056 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC3O75056 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC18.8■□□□□ 0.6
SDC3O75056 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
SDC3O75056 AC104596.1-202ENST00000507486 759 ntTSL 3 BASIC18.8■□□□□ 0.6
SDC3O75056 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC18.8■□□□□ 0.6
SDC3O75056 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC18.8■□□□□ 0.6
SDC3O75056 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
SDC3O75056 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.8■□□□□ 0.6
SDC3O75056 AL512604.3-201ENST00000569583 964 ntBASIC18.8■□□□□ 0.6
SDC3O75056 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC18.8■□□□□ 0.6
SDC3O75056 UQCR11-201ENST00000585671 753 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms