Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
PROM1O43490 FARSA-207ENST00000588025 2057 ntTSL 5 BASIC18.29■□□□□ 0.52
PROM1O43490 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC18.29■□□□□ 0.52
PROM1O43490 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC18.29■□□□□ 0.52
PROM1O43490 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 AC098590.1-201ENST00000468126 897 ntBASIC18.29■□□□□ 0.52
PROM1O43490 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC18.29■□□□□ 0.52
PROM1O43490 AC142381.4-202ENST00000563973 229 ntBASIC18.29■□□□□ 0.52
PROM1O43490 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.29■□□□□ 0.52
PROM1O43490 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.29■□□□□ 0.52
PROM1O43490 FAM197Y4-202ENST00000622692 608 ntBASIC18.29■□□□□ 0.52
PROM1O43490 AP006294.2-201ENST00000641667 209 ntBASIC18.29■□□□□ 0.52
PROM1O43490 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PROM1O43490 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC18.29■□□□□ 0.52
PROM1O43490 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
PROM1O43490 NPIPA8-201ENST00000525596 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 CEMP1-202ENST00000567119 1374 ntAPPRIS P2 BASIC18.29■□□□□ 0.52
PROM1O43490 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PROM1O43490 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PROM1O43490 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC18.28■□□□□ 0.52
PROM1O43490 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PROM1O43490 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PROM1O43490 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC18.28■□□□□ 0.52
PROM1O43490 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC18.28■□□□□ 0.52
PROM1O43490 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.28■□□□□ 0.52
PROM1O43490 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC18.28■□□□□ 0.52
PROM1O43490 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC18.28■□□□□ 0.52
PROM1O43490 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC18.28■□□□□ 0.52
PROM1O43490 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC18.28■□□□□ 0.52
PROM1O43490 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
PROM1O43490 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
PROM1O43490 HLA-A-209ENST00000638375 975 ntBASIC18.28■□□□□ 0.52
PROM1O43490 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
PROM1O43490 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC18.28■□□□□ 0.52
PROM1O43490 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
PROM1O43490 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC18.28■□□□□ 0.52
PROM1O43490 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PROM1O43490 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
PROM1O43490 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
PROM1O43490 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.28■□□□□ 0.52
PROM1O43490 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.28■□□□□ 0.52
PROM1O43490 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC18.27■□□□□ 0.52
PROM1O43490 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
PROM1O43490 TLE3-201ENST00000317509 5207 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PROM1O43490 ANXA8L1-201ENST00000584982 2174 ntTSL 2 BASIC18.27■□□□□ 0.52
PROM1O43490 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
PROM1O43490 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
PROM1O43490 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
PROM1O43490 GCSHP5-201ENST00000443090 522 ntBASIC18.27■□□□□ 0.52
PROM1O43490 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC18.27■□□□□ 0.52
PROM1O43490 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC18.27■□□□□ 0.52
PROM1O43490 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC18.27■□□□□ 0.52
PROM1O43490 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.27■□□□□ 0.52
PROM1O43490 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.27■□□□□ 0.52
PROM1O43490 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC18.27■□□□□ 0.52
PROM1O43490 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
PROM1O43490 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.27■□□□□ 0.51
PROM1O43490 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
PROM1O43490 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
PROM1O43490 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC18.27■□□□□ 0.51
PROM1O43490 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC18.27■□□□□ 0.51
PROM1O43490 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
PROM1O43490 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC18.27■□□□□ 0.51
PROM1O43490 SDHAP1-207ENST00000440850 2000 ntBASIC18.27■□□□□ 0.51
PROM1O43490 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 HTR7P1-201ENST00000538670 1336 ntBASIC18.26■□□□□ 0.51
PROM1O43490 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.26■□□□□ 0.51
PROM1O43490 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.26■□□□□ 0.51
PROM1O43490 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 PMF1-BGLAP-202ENST00000368276 852 ntTSL 3 BASIC18.26■□□□□ 0.51
PROM1O43490 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.26■□□□□ 0.51
PROM1O43490 SFXN1-203ENST00000502393 637 ntTSL 2 BASIC18.26■□□□□ 0.51
PROM1O43490 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC18.26■□□□□ 0.51
PROM1O43490 SPIB-206ENST00000596074 847 ntTSL 2 BASIC18.26■□□□□ 0.51
PROM1O43490 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
PROM1O43490 TREX2-203ENST00000338525 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.26■□□□□ 0.51
PROM1O43490 ILDR2-203ENST00000469934 1950 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
PROM1O43490 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PROM1O43490 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.25■□□□□ 0.51
PROM1O43490 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms