Protein–RNA interactions for Protein: O14627

CDX4, Homeobox protein CDX-4, humanhuman

Predicted RBP Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX4O14627 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDX4O14627 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX4O14627 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDX4O14627 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDX4O14627 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX4O14627 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDX4O14627 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
CDX4O14627 DNAJB6-218ENST00000634080 1005 ntTSL 2 BASIC18.61■□□□□ 0.57
CDX4O14627 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
CDX4O14627 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 TXNRD3-205ENST00000640797 1824 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CDX4O14627 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 ASL-205ENST00000395332 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 GPR137-204ENST00000438980 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
CDX4O14627 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.6■□□□□ 0.57
CDX4O14627 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.6■□□□□ 0.57
CDX4O14627 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC18.6■□□□□ 0.57
CDX4O14627 CHCHD2P8-201ENST00000429873 447 ntBASIC18.6■□□□□ 0.57
CDX4O14627 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC18.6■□□□□ 0.57
CDX4O14627 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.6■□□□□ 0.57
CDX4O14627 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.6■□□□□ 0.57
CDX4O14627 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
CDX4O14627 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC18.6■□□□□ 0.57
CDX4O14627 CXorf40A-208ENST00000434353 1524 ntAPPRIS ALT1 TSL 5 BASIC18.59■□□□□ 0.57
CDX4O14627 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX4O14627 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC18.59■□□□□ 0.57
CDX4O14627 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDX4O14627 AL117328.2-201ENST00000624617 1940 ntBASIC18.59■□□□□ 0.57
CDX4O14627 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX4O14627 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX4O14627 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CDX4O14627 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC18.59■□□□□ 0.57
CDX4O14627 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.59■□□□□ 0.57
CDX4O14627 PHGR1-201ENST00000448599 436 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
CDX4O14627 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
CDX4O14627 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.59■□□□□ 0.57
CDX4O14627 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDX4O14627 AC091304.2-201ENST00000564639 760 ntBASIC18.59■□□□□ 0.57
CDX4O14627 AC024243.1-201ENST00000609234 778 ntBASIC18.59■□□□□ 0.57
CDX4O14627 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.59■□□□□ 0.57
CDX4O14627 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC18.59■□□□□ 0.57
CDX4O14627 WWC2-AS2-201ENST00000578387 2183 ntBASIC18.59■□□□□ 0.57
CDX4O14627 PEX16-210ENST00000532681 1639 ntTSL 3 BASIC18.59■□□□□ 0.57
CDX4O14627 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX4O14627 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
CDX4O14627 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
CDX4O14627 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDX4O14627 AC140125.2-201ENST00000502515 1517 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDX4O14627 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
CDX4O14627 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
CDX4O14627 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.58■□□□□ 0.57
CDX4O14627 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
CDX4O14627 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC18.58■□□□□ 0.57
CDX4O14627 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC18.58■□□□□ 0.57
CDX4O14627 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC18.58■□□□□ 0.57
CDX4O14627 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.58■□□□□ 0.57
CDX4O14627 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC18.58■□□□□ 0.56
CDX4O14627 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC18.58■□□□□ 0.56
CDX4O14627 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC18.58■□□□□ 0.56
CDX4O14627 AC106795.1-205ENST00000512851 1056 ntBASIC18.58■□□□□ 0.56
CDX4O14627 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC18.58■□□□□ 0.56
CDX4O14627 AL121772.3-201ENST00000610840 674 ntBASIC18.58■□□□□ 0.56
CDX4O14627 WDR6-223ENST00000627177 207 ntTSL 2 BASIC18.58■□□□□ 0.56
CDX4O14627 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDX4O14627 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC18.58■□□□□ 0.56
CDX4O14627 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
CDX4O14627 PCSK6-218ENST00000619160 3093 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
CDX4O14627 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.57■□□□□ 0.56
CDX4O14627 SOCS2-206ENST00000549122 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX4O14627 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX4O14627 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CDX4O14627 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC18.57■□□□□ 0.56
CDX4O14627 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX4O14627 CCDC74A-206ENST00000467992 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX4O14627 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX4O14627 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.57■□□□□ 0.56
CDX4O14627 AC093525.10-201ENST00000625130 1569 ntBASIC18.57■□□□□ 0.56
CDX4O14627 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDX4O14627 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CDX4O14627 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX4O14627 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX4O14627 SLC25A6P4-201ENST00000586535 553 ntBASIC18.57■□□□□ 0.56
CDX4O14627 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
CDX4O14627 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
CDX4O14627 AC079602.3-201ENST00000623931 403 ntBASIC18.57■□□□□ 0.56
CDX4O14627 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC18.57■□□□□ 0.56
CDX4O14627 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX4O14627 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX4O14627 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
CDX4O14627 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms