Protein–RNA interactions for Protein: O00151

PDLIM1, PDZ and LIM domain protein 1, humanhuman

Predictions only

Length 329 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1O00151 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM1O00151 CCNL2-201ENST00000400809 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM1O00151 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
PDLIM1O00151 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM1O00151 AC068880.1-201ENST00000507289 2297 ntBASIC18.32■□□□□ 0.52
PDLIM1O00151 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
PDLIM1O00151 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM1O00151 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PDLIM1O00151 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC18.32■□□□□ 0.52
PDLIM1O00151 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM1O00151 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.32■□□□□ 0.52
PDLIM1O00151 TMEM41B-205ENST00000533723 723 ntTSL 2 BASIC18.32■□□□□ 0.52
PDLIM1O00151 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC18.32■□□□□ 0.52
PDLIM1O00151 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.32■□□□□ 0.52
PDLIM1O00151 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC18.32■□□□□ 0.52
PDLIM1O00151 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.32■□□□□ 0.52
PDLIM1O00151 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM1O00151 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM1O00151 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM1O00151 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM1O00151 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC18.32■□□□□ 0.52
PDLIM1O00151 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
PDLIM1O00151 AC006333.2-201ENST00000607957 2099 ntBASIC18.32■□□□□ 0.52
PDLIM1O00151 CACNA1B-206ENST00000371372 9790 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
PDLIM1O00151 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC18.32■□□□□ 0.52
PDLIM1O00151 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM1O00151 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC18.32■□□□□ 0.52
PDLIM1O00151 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM1O00151 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
PDLIM1O00151 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.32■□□□□ 0.52
PDLIM1O00151 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM1O00151 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
PDLIM1O00151 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM1O00151 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.31■□□□□ 0.52
PDLIM1O00151 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM1O00151 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM1O00151 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.31■□□□□ 0.52
PDLIM1O00151 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.31■□□□□ 0.52
PDLIM1O00151 DSCC1-201ENST00000313655 2314 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM1O00151 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.31■□□□□ 0.52
PDLIM1O00151 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC18.31■□□□□ 0.52
PDLIM1O00151 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM1O00151 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC18.31■□□□□ 0.52
PDLIM1O00151 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.31■□□□□ 0.52
PDLIM1O00151 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM1O00151 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM1O00151 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM1O00151 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM1O00151 SSBP2-218ENST00000514493 1790 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM1O00151 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM1O00151 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC18.31■□□□□ 0.52
PDLIM1O00151 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
PDLIM1O00151 AC068338.2-201ENST00000563278 1430 ntBASIC18.31■□□□□ 0.52
PDLIM1O00151 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.3■□□□□ 0.52
PDLIM1O00151 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 CPZ-202ENST00000360986 2267 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC18.3■□□□□ 0.52
PDLIM1O00151 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
PDLIM1O00151 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.3■□□□□ 0.52
PDLIM1O00151 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 PPP1R14BP3-201ENST00000509033 445 ntBASIC18.3■□□□□ 0.52
PDLIM1O00151 AL162412.1-201ENST00000567129 965 ntBASIC18.3■□□□□ 0.52
PDLIM1O00151 AL050303.2-201ENST00000619798 666 ntBASIC18.3■□□□□ 0.52
PDLIM1O00151 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC18.3■□□□□ 0.52
PDLIM1O00151 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
PDLIM1O00151 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
PDLIM1O00151 AC012313.1-201ENST00000593393 3059 ntBASIC18.3■□□□□ 0.52
PDLIM1O00151 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.3■□□□□ 0.52
PDLIM1O00151 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
PDLIM1O00151 AIRN-201ENST00000601203 4374 ntBASIC18.3■□□□□ 0.52
PDLIM1O00151 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
PDLIM1O00151 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC18.29■□□□□ 0.52
PDLIM1O00151 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC18.29■□□□□ 0.52
PDLIM1O00151 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDLIM1O00151 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDLIM1O00151 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.29■□□□□ 0.52
PDLIM1O00151 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
PDLIM1O00151 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.29■□□□□ 0.52
PDLIM1O00151 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC18.29■□□□□ 0.52
PDLIM1O00151 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC18.29■□□□□ 0.52
PDLIM1O00151 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC18.29■□□□□ 0.52
PDLIM1O00151 MIR663A-201ENST00000385250 93 ntBASIC18.29■□□□□ 0.52
PDLIM1O00151 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC18.29■□□□□ 0.52
PDLIM1O00151 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC18.29■□□□□ 0.52
PDLIM1O00151 AC005181.1-201ENST00000604782 1256 ntBASIC18.29■□□□□ 0.52
PDLIM1O00151 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
PDLIM1O00151 TEPSIN-213ENST00000637944 1782 ntAPPRIS ALT2 TSL 5 BASIC18.29■□□□□ 0.52
PDLIM1O00151 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms