Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC079416.3-201ENST00000624479 549 ntBASIC4.08□□□□□ -1.76
MSH3P20585 CU459211.1-201ENST00000635667 749 ntBASIC4.08□□□□□ -1.76
MSH3P20585 OR11H4-203ENST00000641525 1082 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
MSH3P20585 NRIP1-201ENST00000318948 7556 ntAPPRIS P1 TSL 2 BASIC4.08□□□□□ -1.76
MSH3P20585 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSH3P20585 MCF2-201ENST00000338585 2826 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
MSH3P20585 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4.07□□□□□ -1.76
MSH3P20585 CFHR3-205ENST00000471440 1965 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
MSH3P20585 CDKL3-209ENST00000523054 1775 ntTSL 2 BASIC4.07□□□□□ -1.76
MSH3P20585 LRRC3B-205ENST00000456208 1551 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSH3P20585 OR11H4-202ENST00000641082 1585 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
MSH3P20585 EMCN-209ENST00000511970 1377 ntAPPRIS ALT2 TSL 2 BASIC4.07□□□□□ -1.76
MSH3P20585 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
MSH3P20585 AL121657.1-201ENST00000327215 531 ntBASIC4.07□□□□□ -1.76
MSH3P20585 SNORA60-201ENST00000362396 134 ntBASIC4.07□□□□□ -1.76
MSH3P20585 RNU6-1214P-201ENST00000363650 109 ntBASIC4.07□□□□□ -1.76
MSH3P20585 SNORD35B-201ENST00000363660 87 ntBASIC4.07□□□□□ -1.76
MSH3P20585 TEX30-204ENST00000376027 1106 ntTSL 5 BASIC4.07□□□□□ -1.76
MSH3P20585 RNY3P9-201ENST00000384727 106 ntBASIC4.07□□□□□ -1.76
MSH3P20585 MIR3074-201ENST00000384885 81 ntBASIC4.07□□□□□ -1.76
MSH3P20585 RNU11-4P-201ENST00000391149 133 ntBASIC4.07□□□□□ -1.76
MSH3P20585 AL022722.2-201ENST00000402519 180 ntBASIC4.07□□□□□ -1.76
MSH3P20585 AL590084.1-201ENST00000407885 387 ntBASIC4.07□□□□□ -1.76
MSH3P20585 PGBD4P8-201ENST00000412993 562 ntBASIC4.07□□□□□ -1.76
MSH3P20585 AL008987.1-201ENST00000415528 237 ntBASIC4.07□□□□□ -1.76
MSH3P20585 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC4.07□□□□□ -1.76
MSH3P20585 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC4.07□□□□□ -1.76
MSH3P20585 LINC01850-201ENST00000429916 357 ntTSL 3 BASIC4.07□□□□□ -1.76
MSH3P20585 RPS6P15-201ENST00000431996 751 ntBASIC4.07□□□□□ -1.76
MSH3P20585 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC4.07□□□□□ -1.76
MSH3P20585 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC4.07□□□□□ -1.76
MSH3P20585 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.07□□□□□ -1.76
MSH3P20585 RPS26P15-201ENST00000488067 348 ntBASIC4.07□□□□□ -1.76
MSH3P20585 AC112204.2-201ENST00000503269 374 ntTSL 2 BASIC4.07□□□□□ -1.76
MSH3P20585 AC025554.1-201ENST00000505641 188 ntBASIC4.07□□□□□ -1.76
MSH3P20585 AC093824.1-201ENST00000508796 343 ntBASIC4.07□□□□□ -1.76
MSH3P20585 AC067817.1-201ENST00000518535 356 ntTSL 2 BASIC4.07□□□□□ -1.76
MSH3P20585 AC063948.1-201ENST00000547360 379 ntTSL 5 BASIC4.07□□□□□ -1.76
MSH3P20585 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC4.07□□□□□ -1.76
MSH3P20585 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.07□□□□□ -1.76
MSH3P20585 AL356804.1-201ENST00000553791 448 ntTSL 5 BASIC4.07□□□□□ -1.76
MSH3P20585 DUXAP6-201ENST00000553858 601 ntBASIC4.07□□□□□ -1.76
MSH3P20585 AC025884.1-201ENST00000556034 378 ntBASIC4.07□□□□□ -1.76
MSH3P20585 AC051619.4-201ENST00000560034 292 ntTSL 5 BASIC4.07□□□□□ -1.76
MSH3P20585 AL031716.1-201ENST00000569106 530 ntTSL 5 BASIC4.07□□□□□ -1.76
MSH3P20585 MIR3912-201ENST00000577566 105 ntBASIC4.07□□□□□ -1.76
MSH3P20585 BPTFP1-201ENST00000579209 492 ntBASIC4.07□□□□□ -1.76
MSH3P20585 AC022662.1-201ENST00000580252 331 ntBASIC4.07□□□□□ -1.76
MSH3P20585 RN7SL600P-201ENST00000581811 299 ntBASIC4.07□□□□□ -1.76
MSH3P20585 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC4.07□□□□□ -1.76
MSH3P20585 AL157770.1-201ENST00000623049 439 ntBASIC4.07□□□□□ -1.76
MSH3P20585 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.07□□□□□ -1.76
MSH3P20585 FAM126B-202ENST00000418596 9333 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
MSH3P20585 DAZ4-202ENST00000382314 3910 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
MSH3P20585 AP005901.5-201ENST00000545779 1796 ntBASIC4.07□□□□□ -1.76
MSH3P20585 AC119744.1-201ENST00000454746 1715 ntBASIC4.07□□□□□ -1.76
MSH3P20585 CXCL11-201ENST00000306621 1606 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSH3P20585 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSH3P20585 ZNF678-202ENST00000397097 8212 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSH3P20585 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.06□□□□□ -1.76
MSH3P20585 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSH3P20585 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
MSH3P20585 XIRP2-204ENST00000409273 12269 ntTSL 1 (best) BASIC4.06□□□□□ -1.76
MSH3P20585 GSTA1-201ENST00000334575 1019 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
MSH3P20585 RNU6-619P-201ENST00000365146 108 ntBASIC4.06□□□□□ -1.76
MSH3P20585 CNIH4-201ENST00000366856 808 ntAPPRIS ALT1 TSL 2 BASIC4.06□□□□□ -1.76
MSH3P20585 SLAMF6-201ENST00000368055 730 ntTSL 2 BASIC4.06□□□□□ -1.76
MSH3P20585 RNU6-83P-201ENST00000384568 112 ntBASIC4.06□□□□□ -1.76
MSH3P20585 ENSAP1-201ENST00000392855 326 ntBASIC4.06□□□□□ -1.76
MSH3P20585 RNA5SP306-201ENST00000411087 107 ntBASIC4.06□□□□□ -1.76
MSH3P20585 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC4.06□□□□□ -1.76
MSH3P20585 OR51A3P-201ENST00000413596 924 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AC092647.1-201ENST00000420654 287 ntBASIC4.06□□□□□ -1.76
MSH3P20585 LINC02238-201ENST00000424953 557 ntTSL 5 BASIC4.06□□□□□ -1.76
MSH3P20585 AL138785.1-201ENST00000425821 331 ntBASIC4.06□□□□□ -1.76
MSH3P20585 RSL24D1P6-201ENST00000426934 401 ntBASIC4.06□□□□□ -1.76
MSH3P20585 ABCC13-201ENST00000429114 611 ntTSL 3 BASIC4.06□□□□□ -1.76
MSH3P20585 RPL7P4-203ENST00000430239 730 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AC023590.1-205ENST00000430457 676 ntTSL 3 BASIC4.06□□□□□ -1.76
MSH3P20585 COX7BP2-201ENST00000437976 242 ntBASIC4.06□□□□□ -1.76
MSH3P20585 RPS4XP4-201ENST00000443195 763 ntBASIC4.06□□□□□ -1.76
MSH3P20585 ANKRD30BP3-201ENST00000444850 1070 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AC114755.5-201ENST00000447760 831 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AL360091.1-201ENST00000447949 496 ntTSL 5 BASIC4.06□□□□□ -1.76
MSH3P20585 AL157359.1-201ENST00000449840 424 ntTSL 3 BASIC4.06□□□□□ -1.76
MSH3P20585 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC4.06□□□□□ -1.76
MSH3P20585 HMGB3P21-201ENST00000452483 547 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC4.06□□□□□ -1.76
MSH3P20585 RPS7P7-201ENST00000463499 571 ntBASIC4.06□□□□□ -1.76
MSH3P20585 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC4.06□□□□□ -1.76
MSH3P20585 AC011979.1-201ENST00000472300 483 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AC010683.1-201ENST00000473673 378 ntBASIC4.06□□□□□ -1.76
MSH3P20585 MTND2P14-201ENST00000482139 351 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AP000563.1-201ENST00000490865 758 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AC107027.1-201ENST00000503006 575 ntTSL 2 BASIC4.06□□□□□ -1.76
MSH3P20585 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC4.06□□□□□ -1.76
MSH3P20585 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC4.06□□□□□ -1.76
MSH3P20585 RN7SKP283-201ENST00000517197 270 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AC008562.1-201ENST00000521763 330 ntBASIC4.06□□□□□ -1.76
MSH3P20585 AC105180.1-201ENST00000523317 426 ntTSL 3 BASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 88.1 ms