RNA–Protein interactions for RNA: ENST00000366856.3

CNIH4-201, Transcript of cornichon family AMPA receptor auxiliary protein 4, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene CNIH4, Length 808 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNIH4-201ENST00000366856 AEBP2Q6ZN18 517 aaPredicted RBP22.34■■□□□ 1.17
CNIH4-201ENST00000366856 CHIC1Q5VXU3 224 aa21.89■■□□□ 1.09
CNIH4-201ENST00000366856 PHF23Q9BUL5 403 aaPredicted RBP19.27■□□□□ 0.68
CNIH4-201ENST00000366856 SENP3Q9H4L4 574 aaPredicted RBP18.95■□□□□ 0.62
CNIH4-201ENST00000366856 PLPPR3Q6T4P5 718 aa17.86■□□□□ 0.45
CNIH4-201ENST00000366856 FOXD1Q16676 465 aa17.58■□□□□ 0.4
CNIH4-201ENST00000366856 ADRA2BP18089 450 aa17.04■□□□□ 0.32
CNIH4-201ENST00000366856 PPP6R1Q9UPN7 881 aa17■□□□□ 0.31
CNIH4-201ENST00000366856 PIAS4Q8N2W9 510 aaPredicted RBP16.68■□□□□ 0.26
CNIH4-201ENST00000366856 MSH5O43196 834 aa16.17■□□□□ 0.18
CNIH4-201ENST00000366856 PPP4R3CPQ6ZMV5 832 aa15.76■□□□□ 0.11
CNIH4-201ENST00000366856 SCAF1Q9H7N4 1312 aaKnown RBP15.55■□□□□ 0.08
CNIH4-201ENST00000366856 KCNA4P22459 653 aa15.54■□□□□ 0.08
CNIH4-201ENST00000366856 MAPK8IP2Q13387 824 aaPredicted RBP15.43■□□□□ 0.06
CNIH4-201ENST00000366856 NCBP3Q53F19 620 aaKnown RBP15.39■□□□□ 0.05
CNIH4-201ENST00000366856 CNKSR2Q8WXI2 1034 aa15.27■□□□□ 0.04
CNIH4-201ENST00000366856 NPM3O75607 178 aaKnown RBP15.15■□□□□ 0.02
CNIH4-201ENST00000366856 DMRT2Q9Y5R5 561 aa15.12■□□□□ 0.01
CNIH4-201ENST00000366856 RNF216Q9NWF9 866 aaPredicted RBP14.92□□□□□ -0.02
CNIH4-201ENST00000366856 SLC4A1APQ9BWU0 796 aaKnown RBP14.84□□□□□ -0.03
CNIH4-201ENST00000366856 HOXD11P31277 338 aaPredicted RBP14.8□□□□□ -0.04
CNIH4-201ENST00000366856 DCAF8L1A6NGE4 600 aa14.69□□□□□ -0.06
CNIH4-201ENST00000366856 EHMT2Q96KQ7 1210 aa14.65□□□□□ -0.06
CNIH4-201ENST00000366856 POTEDQ86YR6 584 aa14.57□□□□□ -0.08
CNIH4-201ENST00000366856 DNAJC5BQ9UF47 199 aa14.46□□□□□ -0.09
CNIH4-201ENST00000366856 ZBTB22O15209 634 aa14.28□□□□□ -0.12
CNIH4-201ENST00000366856 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.27□□□□□ -0.13
CNIH4-201ENST00000366856 CSRNP3Q8WYN3 585 aa14.26□□□□□ -0.13
CNIH4-201ENST00000366856 SLC4A2P04920 1241 aa14.25□□□□□ -0.13
CNIH4-201ENST00000366856 FOXD4L1Q9NU39 408 aa14.25□□□□□ -0.13
CNIH4-201ENST00000366856 MYCNP04198 464 aaPredicted RBP14□□□□□ -0.17
CNIH4-201ENST00000366856 U3KPZ7 1027 aaPredicted RBP13.97□□□□□ -0.17
CNIH4-201ENST00000366856 RNF39Q9H2S5 420 aa13.84□□□□□ -0.19
CNIH4-201ENST00000366856 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.82□□□□□ -0.2
CNIH4-201ENST00000366856 HNRNPUL2Q1KMD3 747 aaKnown RBP13.82□□□□□ -0.2
CNIH4-201ENST00000366856 SAMD1Q6SPF0 538 aaPredicted RBP13.79□□□□□ -0.2
CNIH4-201ENST00000366856 C1QBPQ07021 282 aaKnown RBP13.68□□□□□ -0.22
CNIH4-201ENST00000366856 ATXN8OSP0DMR3 200 aa13.66□□□□□ -0.22
CNIH4-201ENST00000366856 APLP2Q06481 763 aa13.66□□□□□ -0.22
CNIH4-201ENST00000366856 ATF5Q9Y2D1 282 aaPredicted RBP13.63□□□□□ -0.23
CNIH4-201ENST00000366856 CAPN15O75808 1086 aa13.6□□□□□ -0.23
CNIH4-201ENST00000366856 SPINK5Q9NQ38 1064 aaPredicted RBP13.59□□□□□ -0.23
CNIH4-201ENST00000366856 TRHP20396 242 aaPredicted RBP13.57□□□□□ -0.24
CNIH4-201ENST00000366856 CACNB1Q02641 598 aaPredicted RBP13.52□□□□□ -0.25
CNIH4-201ENST00000366856 ZNF219Q9P2Y4 722 aaPredicted RBP13.47□□□□□ -0.25
CNIH4-201ENST00000366856 ABCB7O75027 752 aa13.37□□□□□ -0.27
CNIH4-201ENST00000366856 POLA2Q14181 598 aa13.3□□□□□ -0.28
CNIH4-201ENST00000366856 DSG3P32926 999 aa13.22□□□□□ -0.29
CNIH4-201ENST00000366856 FBLN2P98095 1184 aa13.09□□□□□ -0.31
CNIH4-201ENST00000366856 ZBTB12Q9Y330 459 aaPredicted RBP13.05□□□□□ -0.32
CNIH4-201ENST00000366856 MKRN4PQ13434 485 aaPredicted RBP13.01□□□□□ -0.33
CNIH4-201ENST00000366856 FKBP8Q14318 412 aa12.99□□□□□ -0.33
CNIH4-201ENST00000366856 OSCARQ8IYS5 282 aa12.88□□□□□ -0.35
CNIH4-201ENST00000366856 SPDYE4A6NLX3 237 aa12.84□□□□□ -0.35
CNIH4-201ENST00000366856 ZNF692Q9BU19 519 aaPredicted RBP12.73□□□□□ -0.37
CNIH4-201ENST00000366856 SPDYE2BA6NHP3 402 aa12.69□□□□□ -0.38
CNIH4-201ENST00000366856 SPDYE6P0CI01 402 aa12.69□□□□□ -0.38
CNIH4-201ENST00000366856 SPDYE2Q495Y8 402 aa12.69□□□□□ -0.38
CNIH4-201ENST00000366856 RBM42Q9BTD8 480 aaKnown RBP12.62□□□□□ -0.39
CNIH4-201ENST00000366856 PABPN1Q86U42 306 aaKnown RBP eCLIP12.57□□□□□ -0.4
CNIH4-201ENST00000366856 SSUH2Q9Y2M2 353 aa12.57□□□□□ -0.4
CNIH4-201ENST00000366856 PROM2Q8N271 834 aa12.47□□□□□ -0.41
CNIH4-201ENST00000366856 AKT1S1Q96B36 256 aa12.46□□□□□ -0.41
CNIH4-201ENST00000366856 FBXO3Q9UK99 471 aa12.43□□□□□ -0.42
CNIH4-201ENST00000366856 CLEC11AQ9Y240 323 aa12.38□□□□□ -0.43
CNIH4-201ENST00000366856 REM2Q8IYK8 340 aaPredicted RBP12.37□□□□□ -0.43
CNIH4-201ENST00000366856 SPDYE1Q8NFV5 336 aaPredicted RBP12.33□□□□□ -0.44
CNIH4-201ENST00000366856 STAG3Q9UJ98 1225 aa12.31□□□□□ -0.44
CNIH4-201ENST00000366856 VASPP50552 380 aaPredicted RBP12.28□□□□□ -0.44
CNIH4-201ENST00000366856 PITPNM1O00562 1244 aa12.26□□□□□ -0.45
CNIH4-201ENST00000366856 PLCD3Q8N3E9 789 aa12.23□□□□□ -0.45
CNIH4-201ENST00000366856 PRR29P0C7W0 189 aa12.21□□□□□ -0.45
CNIH4-201ENST00000366856 MIER1Q8N108 512 aa12.2□□□□□ -0.46
CNIH4-201ENST00000366856 KLHL34Q8N239 644 aa12.15□□□□□ -0.46
CNIH4-201ENST00000366856 PLEKHG5O94827 1062 aa12.14□□□□□ -0.47
CNIH4-201ENST00000366856 IFNLR1Q8IU57 520 aaPredicted RBP12.09□□□□□ -0.47
CNIH4-201ENST00000366856 CHRDL2Q6WN34 429 aa12.08□□□□□ -0.48
CNIH4-201ENST00000366856 CHADLQ6NUI6 762 aa12.03□□□□□ -0.48
CNIH4-201ENST00000366856 CREBZFQ9NS37 354 aa12.01□□□□□ -0.49
CNIH4-201ENST00000366856 ZBTB47Q9UFB7 747 aaPredicted RBP11.99□□□□□ -0.49
CNIH4-201ENST00000366856 PRKAR2AP13861 404 aaKnown RBP11.97□□□□□ -0.49
CNIH4-201ENST00000366856 SPOCK2Q92563 424 aa11.96□□□□□ -0.49
CNIH4-201ENST00000366856 RTN4Q9NQC3 1192 aaKnown RBP11.96□□□□□ -0.49
CNIH4-201ENST00000366856 AMER1Q5JTC6 1135 aaPredicted RBP11.95□□□□□ -0.5
CNIH4-201ENST00000366856 PIP4P2Q8N4L2 257 aa11.94□□□□□ -0.5
CNIH4-201ENST00000366856 FXR2P51116 673 aaKnown RBP eCLIP11.92□□□□□ -0.5
CNIH4-201ENST00000366856 NPM1P06748 294 aaKnown RBP eCLIP11.86□□□□□ -0.51
CNIH4-201ENST00000366856 CIZ1Q9ULV3 898 aaPredicted RBP11.85□□□□□ -0.51
CNIH4-201ENST00000366856 FARP1Q9Y4F1 1045 aaPredicted RBP11.85□□□□□ -0.51
CNIH4-201ENST00000366856 MNX1P50219 401 aaPredicted RBP11.84□□□□□ -0.51
CNIH4-201ENST00000366856 DCAF8Q5TAQ9 597 aa11.78□□□□□ -0.52
CNIH4-201ENST00000366856 NUBP1P53384 320 aa11.77□□□□□ -0.53
CNIH4-201ENST00000366856 RASEFQ8IZ41 740 aa11.76□□□□□ -0.53
CNIH4-201ENST00000366856 FAM212AQ96EL1 285 aa11.76□□□□□ -0.53
CNIH4-201ENST00000366856 TSPYL2Q9H2G4 693 aaPredicted RBP11.75□□□□□ -0.53
CNIH4-201ENST00000366856 ECM2O94769 699 aaPredicted RBP11.71□□□□□ -0.53
CNIH4-201ENST00000366856 DCAF8L2P0C7V8 631 aa11.71□□□□□ -0.53
CNIH4-201ENST00000366856 PKD2Q13563 968 aa11.71□□□□□ -0.53
CNIH4-201ENST00000366856 GSE1Q14687 1217 aa11.71□□□□□ -0.53
CNIH4-201ENST00000366856 PAK3O75914 559 aaPredicted RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms