Protein–RNA interactions for Protein: Q9Y5H8

PCDHA3, Protocadherin alpha-3, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA3Q9Y5H8 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
PCDHA3Q9Y5H8 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 IRX1P1-201ENST00000438849 1838 ntBASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 MAP1LC3A-203ENST00000397709 698 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 PACRGL-206ENST00000502374 1034 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 AC098934.4-201ENST00000564127 592 ntBASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 SLC22A18-202ENST00000347936 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
PCDHA3Q9Y5H8 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 EPOR-201ENST00000222139 2411 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 VMO1-201ENST00000328739 766 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 TUBB8P6-201ENST00000436895 1288 ntBASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 AL138781.1-201ENST00000566567 1274 ntBASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 GAMT-205ENST00000640762 751 ntTSL 5 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
PCDHA3Q9Y5H8 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
PCDHA3Q9Y5H8 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.82
PCDHA3Q9Y5H8 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
PCDHA3Q9Y5H8 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 AL031598.1-201ENST00000561511 1773 ntBASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 MBIP-203ENST00000416007 1648 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 AC093525.10-201ENST00000625130 1569 ntBASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
PCDHA3Q9Y5H8 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms