Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
PCDHB3Q9Y5E6 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
PCDHB3Q9Y5E6 LDHD-201ENST00000300051 2067 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
PCDHB3Q9Y5E6 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC18.89■□□□□ 0.62
PCDHB3Q9Y5E6 RALGPS1-204ENST00000373436 1667 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 AL353807.1-201ENST00000427475 662 ntBASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 KRT18P21-201ENST00000515767 1272 ntBASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 AC004264.1-201ENST00000608354 794 ntBASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 BABAM1-208ENST00000598188 1470 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
PCDHB3Q9Y5E6 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 MED15P9-202ENST00000427638 1841 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 F2R-202ENST00000505600 442 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 AQP4-AS1-204ENST00000582605 525 ntTSL 4 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 DMAP1-202ENST00000361745 1545 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
PCDHB3Q9Y5E6 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 CALM3-202ENST00000391918 702 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 PWWP2AP1-201ENST00000429776 2273 ntBASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 AC009093.4-201ENST00000567984 561 ntTSL 4 BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 AC010331.1-201ENST00000611423 582 ntBASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
PCDHB3Q9Y5E6 FAR2P2-204ENST00000424873 2070 ntTSL 2 BASIC18.86■□□□□ 0.61
PCDHB3Q9Y5E6 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC18.86■□□□□ 0.61
PCDHB3Q9Y5E6 MOK-225ENST00000522867 1883 ntTSL 5 BASIC18.86■□□□□ 0.61
PCDHB3Q9Y5E6 RAB34-201ENST00000301043 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHB3Q9Y5E6 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHB3Q9Y5E6 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC18.86■□□□□ 0.61
PCDHB3Q9Y5E6 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHB3Q9Y5E6 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHB3Q9Y5E6 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHB3Q9Y5E6 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHB3Q9Y5E6 CMTM8-201ENST00000307526 1174 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHB3Q9Y5E6 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
PCDHB3Q9Y5E6 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms