Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 HCCS-201ENST00000321143 2277 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 KRASP1-201ENST00000407852 552 ntBASIC20.74■□□□□ 0.91
SIX2Q9NPC8 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 MIR4651-201ENST00000582622 73 ntBASIC20.74■□□□□ 0.91
SIX2Q9NPC8 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SIX2Q9NPC8 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 LY6E-205ENST00000519611 635 ntTSL 3 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 AC124016.1-201ENST00000609552 612 ntBASIC20.73■□□□□ 0.91
SIX2Q9NPC8 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SIX2Q9NPC8 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SIX2Q9NPC8 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SIX2Q9NPC8 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC20.72■□□□□ 0.91
SIX2Q9NPC8 UBQLN4P1-201ENST00000461599 1801 ntBASIC20.72■□□□□ 0.91
SIX2Q9NPC8 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX2Q9NPC8 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX2Q9NPC8 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SIX2Q9NPC8 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC20.72■□□□□ 0.91
SIX2Q9NPC8 RN7SL471P-201ENST00000580476 299 ntBASIC20.72■□□□□ 0.91
SIX2Q9NPC8 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.72■□□□□ 0.91
SIX2Q9NPC8 AC073648.6-201ENST00000641589 218 ntBASIC20.72■□□□□ 0.91
SIX2Q9NPC8 RNF165-205ENST00000588679 2904 ntBASIC20.72■□□□□ 0.91
SIX2Q9NPC8 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SIX2Q9NPC8 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SIX2Q9NPC8 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC20.72■□□□□ 0.91
SIX2Q9NPC8 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 FDFT1-226ENST00000623368 2368 ntTSL 2 BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 RNASEK-202ENST00000548577 810 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.71■□□□□ 0.91
SIX2Q9NPC8 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.91
SIX2Q9NPC8 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SIX2Q9NPC8 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SIX2Q9NPC8 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms