Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 KLHDC4-201ENST00000270583 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 ABCC6-209ENST00000640696 1893 ntTSL 5 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 RAB11B-201ENST00000328024 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 ETV4-204ENST00000545089 1628 ntTSL 2 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 CROCCP5-201ENST00000436658 830 ntBASIC16.82■□□□□ 0.28
NKX3-1Q99801 SERP1-205ENST00000487153 657 ntTSL 4 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 AC231657.2-201ENST00000624556 255 ntBASIC16.82■□□□□ 0.28
NKX3-1Q99801 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 ADK-206ENST00000541550 2222 ntTSL 2 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
NKX3-1Q99801 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.82■□□□□ 0.28
NKX3-1Q99801 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 AC005181.1-201ENST00000604782 1256 ntBASIC16.81■□□□□ 0.28
NKX3-1Q99801 PLCXD1-202ENST00000381663 1863 ntAPPRIS P2 TSL 5 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 PRDM11-201ENST00000424263 1858 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 USP49-202ENST00000373010 2446 ntTSL 5 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 KRT87P-201ENST00000529785 1700 ntTSL 2 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 ANKS3-202ENST00000446014 2265 ntTSL 5 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC16.81■□□□□ 0.28
NKX3-1Q99801 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
NKX3-1Q99801 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 AC009113.1-201ENST00000570267 2443 ntBASIC16.8■□□□□ 0.28
NKX3-1Q99801 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 PDLIM4-201ENST00000253754 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 AC023632.3-201ENST00000521633 145 ntBASIC16.8■□□□□ 0.28
NKX3-1Q99801 PHB2-213ENST00000546111 858 ntTSL 2 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 ADAP1-217ENST00000611167 2118 ntTSL 5 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 PARP1-210ENST00000629232 477 ntTSL 5 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 AC006333.2-201ENST00000607957 2099 ntBASIC16.8■□□□□ 0.28
NKX3-1Q99801 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
NKX3-1Q99801 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC16.8■□□□□ 0.28
NKX3-1Q99801 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms