Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC42Q96M95 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC42Q96M95 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC42Q96M95 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC42Q96M95 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC42Q96M95 RER1-204ENST00000378518 522 ntTSL 3 BASIC20.8■□□□□ 0.92
CCDC42Q96M95 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC20.8■□□□□ 0.92
CCDC42Q96M95 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC20.8■□□□□ 0.92
CCDC42Q96M95 AF201337.1-201ENST00000520239 748 ntBASIC20.8■□□□□ 0.92
CCDC42Q96M95 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.8■□□□□ 0.92
CCDC42Q96M95 AC022517.1-201ENST00000592429 346 ntBASIC20.8■□□□□ 0.92
CCDC42Q96M95 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC42Q96M95 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC42Q96M95 SERPINB6-204ENST00000380529 1370 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CCDC42Q96M95 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC42Q96M95 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC42Q96M95 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC42Q96M95 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CCDC42Q96M95 ACAP3-202ENST00000354700 3896 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 UBE2E1-201ENST00000306627 1511 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 NR1H2-210ENST00000598168 1915 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 LLGL2-203ENST00000392550 3509 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 GGT1-206ENST00000404223 952 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 C5orf38-206ENST00000505778 509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 MARS-234ENST00000630571 216 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 MARS-235ENST00000630803 183 ntTSL 3 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 NAPA-210ENST00000595227 1460 ntTSL 3 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC20.79■□□□□ 0.92
CCDC42Q96M95 SH3BP1-201ENST00000357436 2852 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CCDC42Q96M95 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC42Q96M95 OTOP2-201ENST00000331427 2147 ntAPPRIS P1 TSL 5 BASIC20.78■□□□□ 0.92
CCDC42Q96M95 AC104581.1-202ENST00000635932 2618 ntBASIC20.78■□□□□ 0.92
CCDC42Q96M95 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC42Q96M95 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC42Q96M95 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC20.78■□□□□ 0.92
CCDC42Q96M95 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC20.78■□□□□ 0.92
CCDC42Q96M95 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC20.78■□□□□ 0.92
CCDC42Q96M95 KCNMA1-278ENST00000640141 5705 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
CCDC42Q96M95 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC42Q96M95 CREG2-201ENST00000324768 6383 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC42Q96M95 SDHAP1-207ENST00000440850 2000 ntBASIC20.78■□□□□ 0.92
CCDC42Q96M95 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC42Q96M95 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC42Q96M95 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
CCDC42Q96M95 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.77■□□□□ 0.92
CCDC42Q96M95 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC42Q96M95 AC104417.2-201ENST00000562989 1793 ntBASIC20.77■□□□□ 0.92
CCDC42Q96M95 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC42Q96M95 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
CCDC42Q96M95 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC42Q96M95 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC42Q96M95 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC42Q96M95 USP39-202ENST00000409025 1946 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC42Q96M95 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.77■□□□□ 0.92
CCDC42Q96M95 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC20.77■□□□□ 0.92
CCDC42Q96M95 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC42Q96M95 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC20.77■□□□□ 0.92
CCDC42Q96M95 NME6-213ENST00000451657 871 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC42Q96M95 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC42Q96M95 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.77■□□□□ 0.92
CCDC42Q96M95 MIR5787-201ENST00000611784 55 ntBASIC20.77■□□□□ 0.92
CCDC42Q96M95 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.77■□□□□ 0.92
CCDC42Q96M95 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
CCDC42Q96M95 HCG11-201ENST00000411553 5696 ntBASIC20.77■□□□□ 0.92
CCDC42Q96M95 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.77■□□□□ 0.92
CCDC42Q96M95 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.77■□□□□ 0.92
CCDC42Q96M95 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC20.77■□□□□ 0.91
CCDC42Q96M95 LONP1-215ENST00000593119 2918 ntTSL 2 BASIC20.77■□□□□ 0.91
CCDC42Q96M95 VBP1-201ENST00000286428 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC42Q96M95 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
CCDC42Q96M95 GOLGA6L3-201ENST00000507199 1679 ntBASIC20.77■□□□□ 0.91
CCDC42Q96M95 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC20.77■□□□□ 0.91
CCDC42Q96M95 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC42Q96M95 CFP-203ENST00000396992 1592 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC42Q96M95 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
CCDC42Q96M95 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC20.76■□□□□ 0.91
CCDC42Q96M95 GDPD1-201ENST00000284116 1821 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 26.1 ms