Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 NOP14-AS1-202ENST00000505731 1999 ntTSL 2 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC20.01■□□□□ 0.79
ATG4AQ8WYN0 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4AQ8WYN0 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4AQ8WYN0 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 POLR1D-203ENST00000399697 2036 ntTSL 1 (best) BASIC20■□□□□ 0.79
ATG4AQ8WYN0 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4AQ8WYN0 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4AQ8WYN0 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4AQ8WYN0 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4AQ8WYN0 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4AQ8WYN0 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 AL138781.1-201ENST00000566567 1274 ntBASIC20■□□□□ 0.79
ATG4AQ8WYN0 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 AC083880.1-201ENST00000608266 535 ntBASIC20■□□□□ 0.79
ATG4AQ8WYN0 HLA-B-256ENST00000639848 1089 ntBASIC20■□□□□ 0.79
ATG4AQ8WYN0 ANKRD18DP-204ENST00000455355 1975 ntBASIC20■□□□□ 0.79
ATG4AQ8WYN0 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4AQ8WYN0 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4AQ8WYN0 NTMT1-210ENST00000613644 1501 ntAPPRIS P1 TSL 3 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 ACVR1B-205ENST00000541224 1791 ntTSL 2 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 TIMP4-201ENST00000287814 1650 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ATG4AQ8WYN0 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC20■□□□□ 0.79
ATG4AQ8WYN0 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC20■□□□□ 0.79
ATG4AQ8WYN0 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20■□□□□ 0.79
ATG4AQ8WYN0 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 AC097658.1-201ENST00000475555 843 ntBASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 PNMA6B-201ENST00000538162 1200 ntBASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 PNN-205ENST00000556530 601 ntTSL 2 BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 MIR4758-201ENST00000577688 71 ntBASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 DCAKD-205ENST00000588499 990 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 AL121906.2-201ENST00000621597 723 ntBASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 STARD3-209ENST00000544210 1666 ntTSL 2 BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 LINC01586-201ENST00000506090 1840 ntTSL 2 BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ATG4AQ8WYN0 SLC39A1-209ENST00000537590 2022 ntTSL 2 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 C16orf59-210ENST00000569496 1911 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 YBX1P10-201ENST00000444752 975 ntBASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 SNHG6-203ENST00000520944 638 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 PFKL-212ENST00000628044 129 ntTSL 3 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 KRT8P8-201ENST00000434750 1448 ntBASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 LMF1-212ENST00000568897 1603 ntTSL 5 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 AC011944.1-201ENST00000316148 1900 ntTSL 2 BASIC19.98■□□□□ 0.79
ATG4AQ8WYN0 EPHX1-201ENST00000272167 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 ART5-203ENST00000397068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
ATG4AQ8WYN0 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms