Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC89Q8N998 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC89Q8N998 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC89Q8N998 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC89Q8N998 AC091874.3-201ENST00000512672 1195 ntBASIC20.01■□□□□ 0.79
CCDC89Q8N998 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
CCDC89Q8N998 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.01■□□□□ 0.79
CCDC89Q8N998 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.01■□□□□ 0.79
CCDC89Q8N998 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC20.01■□□□□ 0.79
CCDC89Q8N998 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC89Q8N998 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC89Q8N998 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC89Q8N998 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC89Q8N998 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC89Q8N998 ZNF815P-204ENST00000434898 1737 ntBASIC20.01■□□□□ 0.79
CCDC89Q8N998 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC89Q8N998 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CCDC89Q8N998 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC20.01■□□□□ 0.79
CCDC89Q8N998 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC20■□□□□ 0.79
CCDC89Q8N998 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20■□□□□ 0.79
CCDC89Q8N998 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 AC124283.5-201ENST00000624661 1809 ntBASIC20■□□□□ 0.79
CCDC89Q8N998 HCK-206ENST00000518730 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC20■□□□□ 0.79
CCDC89Q8N998 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC20■□□□□ 0.79
CCDC89Q8N998 NPY-202ENST00000405982 565 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20■□□□□ 0.79
CCDC89Q8N998 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20■□□□□ 0.79
CCDC89Q8N998 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CCDC89Q8N998 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC20■□□□□ 0.79
CCDC89Q8N998 GNB5-211ENST00000560116 918 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
CCDC89Q8N998 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC20■□□□□ 0.79
CCDC89Q8N998 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20■□□□□ 0.79
CCDC89Q8N998 SLC16A3-221ENST00000617373 2048 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CCDC89Q8N998 SLC16A3-222ENST00000619321 2015 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CCDC89Q8N998 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC89Q8N998 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC20■□□□□ 0.79
CCDC89Q8N998 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
CCDC89Q8N998 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
CCDC89Q8N998 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
CCDC89Q8N998 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC89Q8N998 TRMU-202ENST00000381019 1381 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC89Q8N998 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC89Q8N998 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC89Q8N998 CPEB2-202ENST00000345451 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC89Q8N998 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CCDC89Q8N998 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC89Q8N998 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC89Q8N998 MIR935-201ENST00000401179 91 ntBASIC19.99■□□□□ 0.79
CCDC89Q8N998 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC19.99■□□□□ 0.79
CCDC89Q8N998 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.99■□□□□ 0.79
CCDC89Q8N998 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC89Q8N998 RPS2P52-201ENST00000469610 820 ntBASIC19.99■□□□□ 0.79
CCDC89Q8N998 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC89Q8N998 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC89Q8N998 C11orf80-214ENST00000532565 1948 ntAPPRIS ALT2 TSL 5 BASIC19.99■□□□□ 0.79
CCDC89Q8N998 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC89Q8N998 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC89Q8N998 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC89Q8N998 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC89Q8N998 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC89Q8N998 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC89Q8N998 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC89Q8N998 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC89Q8N998 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC19.98■□□□□ 0.79
CCDC89Q8N998 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC19.98■□□□□ 0.79
CCDC89Q8N998 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
CCDC89Q8N998 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC89Q8N998 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC89Q8N998 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC89Q8N998 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC89Q8N998 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC19.98■□□□□ 0.79
CCDC89Q8N998 OCIAD2-205ENST00000508632 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC89Q8N998 BET1L-207ENST00000529614 560 ntTSL 5 BASIC19.98■□□□□ 0.79
CCDC89Q8N998 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC19.98■□□□□ 0.79
CCDC89Q8N998 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC89Q8N998 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC89Q8N998 SGCE-207ENST00000447873 1597 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC89Q8N998 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC89Q8N998 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC89Q8N998 SARDH-201ENST00000298628 1484 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC89Q8N998 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC89Q8N998 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC89Q8N998 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC89Q8N998 AL049812.1-201ENST00000432563 2267 ntBASIC19.97■□□□□ 0.79
CCDC89Q8N998 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC89Q8N998 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC89Q8N998 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC89Q8N998 AC092368.3-202ENST00000574180 1591 ntBASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms