Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC20.32■□□□□ 0.84
SCUBE3Q8IX30 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.32■□□□□ 0.84
SCUBE3Q8IX30 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 KRT16P1-201ENST00000399124 1418 ntBASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 AP001412.1-201ENST00000608405 714 ntBASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 AC113410.3-201ENST00000623366 203 ntBASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 AL032819.2-201ENST00000624543 2162 ntBASIC20.31■□□□□ 0.84
SCUBE3Q8IX30 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 AKIRIN2-201ENST00000257787 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 MDFI-202ENST00000373050 809 ntTSL 2 BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 MIR718-201ENST00000390190 70 ntBASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 MIR1224-201ENST00000408193 85 ntBASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 AC004980.1-204ENST00000429707 299 ntBASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 AC131212.4-201ENST00000623606 975 ntBASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 AC005332.7-201ENST00000614046 2005 ntBASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 ZDHHC14-203ENST00000359775 7380 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 ECE1-205ENST00000436918 2328 ntTSL 2 BASIC20.3■□□□□ 0.84
SCUBE3Q8IX30 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 C7orf50-201ENST00000357429 1294 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 ASH1L-AS1-202ENST00000456633 911 ntTSL 2 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 LINC02167-201ENST00000562769 594 ntTSL 3 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 GRAP-204ENST00000573099 846 ntTSL 3 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 PRELID3A-201ENST00000336990 1715 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 PRELID3A-202ENST00000440960 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 ANXA8-208ENST00000611843 2174 ntTSL 2 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
SCUBE3Q8IX30 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 FOSL1-204ENST00000532401 1132 ntTSL 2 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 AC006504.5-207ENST00000586220 487 ntTSL 2 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 ZNF510-203ENST00000375231 5616 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 AMDHD2-201ENST00000293971 1459 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 LAPTM4B-204ENST00000619747 2758 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SCUBE3Q8IX30 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms