Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 LYPD5-202ENST00000414615 2137 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 CCND3-204ENST00000414200 1724 ntTSL 2 BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 AC080080.1-201ENST00000625121 2420 ntBASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 AC241377.3-202ENST00000626088 1088 ntBASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 AC241585.3-202ENST00000628937 1088 ntBASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 AC245100.8-202ENST00000629247 1058 ntBASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 AD000864.1-201ENST00000624076 2295 ntBASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.12■□□□□ 0.17
CCDC28AQ8IWP9 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 PKMYT1-203ENST00000431515 2308 ntTSL 2 BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 AC068587.7-201ENST00000641602 218 ntBASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 KRT83-201ENST00000293670 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CCDC28AQ8IWP9 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 MARC2-202ENST00000366913 2134 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 STX4-202ENST00000394998 1498 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 GTSE1-AS1-202ENST00000623117 1518 ntBASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 DR1-201ENST00000370267 1647 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 BEST4-201ENST00000372207 2047 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 KRT14-201ENST00000167586 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CCDC28AQ8IWP9 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC28AQ8IWP9 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC28AQ8IWP9 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC28AQ8IWP9 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms