Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.37■■□□□ 1.17
KRT40Q6A162 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC22.36■■□□□ 1.17
KRT40Q6A162 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
KRT40Q6A162 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
KRT40Q6A162 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
KRT40Q6A162 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
KRT40Q6A162 CEP85L-205ENST00000419517 2079 ntAPPRIS P3 TSL 1 (best) BASIC22.36■■□□□ 1.17
KRT40Q6A162 ANG-201ENST00000336811 1222 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
KRT40Q6A162 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
KRT40Q6A162 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC22.36■■□□□ 1.17
KRT40Q6A162 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC22.36■■□□□ 1.17
KRT40Q6A162 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC22.36■■□□□ 1.17
KRT40Q6A162 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC22.36■■□□□ 1.17
KRT40Q6A162 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC22.36■■□□□ 1.17
KRT40Q6A162 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC22.36■■□□□ 1.17
KRT40Q6A162 AC133561.5-201ENST00000635547 218 ntBASIC22.36■■□□□ 1.17
KRT40Q6A162 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC22.36■■□□□ 1.17
KRT40Q6A162 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC22.36■■□□□ 1.17
KRT40Q6A162 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC22.36■■□□□ 1.17
KRT40Q6A162 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
KRT40Q6A162 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC22.35■■□□□ 1.17
KRT40Q6A162 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC22.35■■□□□ 1.17
KRT40Q6A162 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC22.35■■□□□ 1.17
KRT40Q6A162 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
KRT40Q6A162 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
KRT40Q6A162 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC22.35■■□□□ 1.17
KRT40Q6A162 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC22.35■■□□□ 1.17
KRT40Q6A162 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC22.35■■□□□ 1.17
KRT40Q6A162 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
KRT40Q6A162 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC22.35■■□□□ 1.17
KRT40Q6A162 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
KRT40Q6A162 CXXC5-AS1-201ENST00000514287 577 ntTSL 4 BASIC22.35■■□□□ 1.17
KRT40Q6A162 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC22.35■■□□□ 1.17
KRT40Q6A162 DHRS4-206ENST00000558581 1143 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
KRT40Q6A162 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC22.35■■□□□ 1.17
KRT40Q6A162 PAFAH1B2-202ENST00000419197 2517 ntTSL 2 BASIC22.35■■□□□ 1.17
KRT40Q6A162 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC22.35■■□□□ 1.17
KRT40Q6A162 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
KRT40Q6A162 AC126773.2-201ENST00000562172 1682 ntTSL 3 BASIC22.35■■□□□ 1.17
KRT40Q6A162 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC22.35■■□□□ 1.17
KRT40Q6A162 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC22.35■■□□□ 1.17
KRT40Q6A162 AC018445.3-201ENST00000624177 1945 ntBASIC22.35■■□□□ 1.17
KRT40Q6A162 AC098818.2-201ENST00000564925 2320 ntBASIC22.35■■□□□ 1.17
KRT40Q6A162 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC22.35■■□□□ 1.17
KRT40Q6A162 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC22.35■■□□□ 1.17
KRT40Q6A162 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC22.35■■□□□ 1.17
KRT40Q6A162 B3GALNT2-201ENST00000313984 1874 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
KRT40Q6A162 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
KRT40Q6A162 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
KRT40Q6A162 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
KRT40Q6A162 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
KRT40Q6A162 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC22.34■■□□□ 1.17
KRT40Q6A162 KXD1-203ENST00000540691 1592 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
KRT40Q6A162 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
KRT40Q6A162 MAEA-208ENST00000505839 1444 ntTSL 2 BASIC22.34■■□□□ 1.17
KRT40Q6A162 TEX21P-204ENST00000641479 1693 ntBASIC22.34■■□□□ 1.17
KRT40Q6A162 GTF3C5-201ENST00000342018 1905 ntTSL 5 BASIC22.34■■□□□ 1.17
KRT40Q6A162 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC22.34■■□□□ 1.17
KRT40Q6A162 HES2-203ENST00000377837 1222 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
KRT40Q6A162 SERF2-207ENST00000409614 582 ntTSL 2 BASIC22.34■■□□□ 1.17
KRT40Q6A162 PTTG1-205ENST00000520452 895 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
KRT40Q6A162 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
KRT40Q6A162 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
KRT40Q6A162 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC22.34■■□□□ 1.17
KRT40Q6A162 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC22.34■■□□□ 1.17
KRT40Q6A162 SNAPC2-201ENST00000221573 1542 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
KRT40Q6A162 SLC23A3-201ENST00000295738 2037 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
KRT40Q6A162 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC22.34■■□□□ 1.17
KRT40Q6A162 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
KRT40Q6A162 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
KRT40Q6A162 NAB2-201ENST00000300131 2711 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
KRT40Q6A162 AC008691.1-203ENST00000515337 1580 ntTSL 2 BASIC22.33■■□□□ 1.17
KRT40Q6A162 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
KRT40Q6A162 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC22.33■■□□□ 1.17
KRT40Q6A162 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
KRT40Q6A162 AP000974.1-201ENST00000623909 2387 ntBASIC22.33■■□□□ 1.17
KRT40Q6A162 GPR20-201ENST00000377741 1515 ntAPPRIS P1 TSL 3 BASIC22.33■■□□□ 1.17
KRT40Q6A162 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC22.33■■□□□ 1.17
KRT40Q6A162 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
KRT40Q6A162 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
KRT40Q6A162 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC22.33■■□□□ 1.17
KRT40Q6A162 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC22.33■■□□□ 1.17
KRT40Q6A162 PRSS57-201ENST00000329267 1025 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
KRT40Q6A162 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
KRT40Q6A162 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.17
KRT40Q6A162 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC22.33■■□□□ 1.17
KRT40Q6A162 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
KRT40Q6A162 KRASP1-201ENST00000407852 552 ntBASIC22.33■■□□□ 1.17
KRT40Q6A162 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC22.33■■□□□ 1.17
KRT40Q6A162 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC22.33■■□□□ 1.17
KRT40Q6A162 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC22.33■■□□□ 1.17
KRT40Q6A162 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
KRT40Q6A162 LY6E-205ENST00000519611 635 ntTSL 3 BASIC22.33■■□□□ 1.17
KRT40Q6A162 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC22.33■■□□□ 1.17
KRT40Q6A162 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC22.33■■□□□ 1.17
KRT40Q6A162 PRSS57-202ENST00000613411 1090 ntAPPRIS P3 TSL 1 (best) BASIC22.33■■□□□ 1.17
KRT40Q6A162 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC22.33■■□□□ 1.17
KRT40Q6A162 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
KRT40Q6A162 UBE2K-203ENST00000445950 2175 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
KRT40Q6A162 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 10.9 ms